8000 dominicrufa (Dominic Rufa) / Starred · GitHub
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Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Python 36,582 3,989 Updated Nov 6, 2026

Exploratory work on free energy calculations with GROMACS using "separated topologies" approach (Rocklin et al., 2013).

Python 28 8 Updated Dec 4, 2024

OpenMM-based framework for absolute and relative binding free energy calculations with the Alchemical Transfer Method

Python 173 44 Updated Aug 18, 2026

An OpenMM plugin that implements the Alchemical Transfer Potential

C++ 40 8 Updated Apr 27, 2023

jax library for E3 Equivariant Neural Networks

Python 235 23 Updated Apr 1, 2026
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