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ome-datatree

Prototype reader for ome-zarr v0.3 data into datatree structure.

Usage:

import ome_datatree
data_path = ...
dt = ome_datatree.open_ome_datatree(data_path)

A sample data can be found at: https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.3/idr0079A/9836998.zarr

if ome-zarr is installed, the data can be downloaded as follows:

import ome_zarr.utils
ome_zarr.utils.download("https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.3/idr0079A/9836998.zarr")

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