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    12 repositories

    • biolink-model

      Public
      Schema and generated objects for biolink data model and upper ontology
      yamlneo4jjson-api
      yamlneo4jjson-apirdfowlspecificationstandardgene-ontologydatamodelmonarchinitiative
      Python
      •
      Other
      •92•269•180•24•Updated Nov 8, 2026Nov 8, 2026

    • information-resource-registry

      Public
      The information resource registry is a listing of data sources present in the NCATS Data Translator system. Each information resource has an identifier, a shor…
      Python
      •
      Apache License 2.0
      •27•6•0•1•Updated Nov 6, 2026Nov 6, 2026

    • biolink-model-toolkit

      Public
      A collection of useful python functions for looking up information and working with the Biolink Model
      biolinkncats-translatorbiolink-model
      biolinkncats-translatorbiolink-model
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •12•27•9•5•Updated Nov 3, 2026Nov 3, 2026

    • kgx

      Public
      KGX is a Python library for exchanging Knowledge Graphs
      knowledge-graphncats-translatorbiolink-model
      knowledge-graphncats-translatorbiolink-model
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •46•189•53•9•Updated Nov 2, 2026Nov 2, 2026

    • resource-ingest-guide-schema

      Public
      A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.
      schemaetlmodel
      schemaetlmodellinkml
      Python
      •
      MIT License
      •1•4•8•1•Updated Jul 10, 2026Jul 10, 2026

    • ingest-metadata

      Public
      Jinja
      •
      MIT License
      •0•2•1•1•Updated Sep 24, 2025Sep 24, 2025

    • ontobio

      Public
      python library for working with ontologies and ontology associations
      pythonbioinformaticsgraph
      pythonbioinformaticsgraphsparqlrdfsemantic-webontologygene-ontologyoboobofoundry
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •33•133•114•20•Updated Feb 11, 2025Feb 11, 2025

    • biolinkml

      Public archive
      DEPRECATED: replaced by linkml
      json-schemaumlsemantic-web
      json-schemaumlsemantic-webowljson-ldshexdeprecated-repobiolink
      Python
      •
      Creative Commons Zero v1.0 Universal
      •12•24•1•0•Updated Apr 4, 2021Apr 4, 2021

    • biolink-model-workshop

      Public
      Biolink Model Workshop at Biocuration 2020
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 4, 2020Dec 4, 2020

    • biolink-graphviz-demo

      Public
      A lightweight web application using viz.js to render Graphviz files.
      JavaScript
      •1•0•0•0•Updated Feb 22, 2017Feb 22, 2017

    • biolink-java-client

      Public
      Java
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 8, 2017Feb 8, 2017

    • biolink-javascript-client

      Public
      Automatically generated js client for biolink-api
      JavaScript
      •
      Apache License 2.0
      •0•1•0•0•Updated Feb 8, 2017Feb 8, 2017
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