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ondist

Commits on Oct 20, 2026
- sync: assemble 0.7-nh13.dev+e4fd5f7 on upstream 74bdd48
  web-flow
  committed
  2d3e83b
- sync: assemble 0.7-nh13.dev+f7d7f14 on upstream 74bdd48
  web-flow
  committed
  e79a76c
Commits on Sep 6, 2026
- sync: assemble 0.7-nh13.dev+7df2016 on upstream f0e1174
  web-flow
  committed
  c30023a
Commits on Aug 22, 2026
- sync: assemble 0.7-nh13.dev+6ca35d1 on upstream f0e1174
  web-flow
  committed
  b0eb65c
Commits on Aug 20, 2026
- sync: assemble 0.7-nh13.dev+1647092 on upstream f0e1174
  web-flow
  committed
  a708168
Commits on Aug 3, 2026
- merge alt-liftgroup (feat/alt-aware-liftgroup)
  web-flow
  committed
  895fb2e
- merge submem-ablation (feat/submem-ablation)
  web-flow
  committed
  11872f1
Commits on Jun 25, 2026
- chore: idiomatic debug flags and comment clarity
  nh13
  committed
  ddc1ddf
- feat: ALT-aware mapping via liftover groups
  nh13
  committed
  fa30992
Commits on Jun 23, 2026
- r383: fixed a crash caused by #39
  lh3
  committed
  27f2821
- Fix seed dedup: rev only the current x[0] group (#39)
  ctsa
  authored
  f9cfd78
Commits on Jun 15, 2026
- feat(map): expose --max-sub-occ and --min-sub-occ CLI ablation flags
  nh13
  committed
  8fb79a9
Commits on May 27, 2026
- r352: heuristic to lower bs-seq mapq
  lh3
  committed
  2757adb
Commits on May 26, 2026
- r350: fixed a bug in seed split under --meth
  lh3
  committed
  ee27d1b
- fixed a logical error; now faster
  lh3
  committed
  6ddb7e2
- simplified the logic; equivalent code
  lh3
  committed
  c29eae1
- in the meth mode, split at disallowed mismatches
  lh3
  committed
  0f53506
Commits on May 10, 2026
- r318: revert; also disable pairing in ex-batch
  lh3
  committed
  20ed35f
- a failed experiment; will revert soon
  lh3
  committed
  a04eb42
Commits on May 8, 2026
- wip: implement meth anchor filtering in process_batch
  
  lh3
  and
  claude
  committed
  d50b37b
Commits on May 3, 2026
- r285: added mb_map_batch() for batch alignment
  
  lh3
  and
  claude
  committed
  3f9fb44
Commits on Apr 12, 2026
- implement mb_anchor_sort in seed.c
  
  lh3
  and
  claude
  committed
  71cf8f9
Commits on Jan 19, 2026
- r161: suppress a gcc warning
  lh3
  committed
  0e1d0ca
- identical output with and without batching
  lh3
  committed
  dd100cf
Commits on Jan 18, 2026
- fixed a bug in the old seeding
  lh3
  committed
  3a0fb3b
- backup; not working yet
  lh3
  committed
  e3106f7
- backup
  lh3
  committed
  4eee83b
Commits on Jan 17, 2026
- deduplicate anchors
  lh3
  committed
  72f082b
- comments only
  lh3
  committed
  0206940
- remove max_occ from smem()
  lh3
  committed
  1f2e27e
- remove duplicated seeds
  lh3
  committed
  b90c5ff
- removed the alternative seeding method
  lh3
  committed
  cd94305
- fixed a bug in the other seeding method
  lh3
  committed
  1d720ba
Commits on Jan 16, 2026
- be more careful about a corner case
  lh3
  committed
  0b77ced
- reduce memory of mb_anchor
  lh3
  committed
  cadd5c9

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Commits on Jan 18, 2026

Commits on Jan 17, 2026

Commits on Jan 16, 2026