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ondist

Commits on Sep 6, 2026
- sync: assemble 0.7-nh13.dev+7df2016 on upstream f0e1174
  web-flow
  committed
  c30023a
Commits on Aug 3, 2026
- merge index-threads-v2 (feat/index-threads-v2)
  web-flow
  committed
  35d67ed
Commits on Jul 19, 2026
- r409: added --mmap=lite mode
  lh3
  committed
  f88db46
- add --mmap option to load the index via mmap()
  
  lh3
  and
  claude
  committed
  d46dd7b
Commits on Jun 25, 2026
- perf(index): parallelize the SA-to-BWT pipeline with OpenMP
  nh13
  committed
  09493af
Commits on May 14, 2026
- backup
  lh3
  committed
  d6d7405
Commits on Jan 18, 2026
- prepare for batch fastmap
  lh3
  committed
  8d55669
- prefetch k-mer cache
  lh3
  committed
  1ec4f9c
- refactor for upcoming changes
  lh3
  committed
  f102587
- backup
  lh3
  committed
  d020857
Commits on Jan 17, 2026
- comments only
  lh3
  committed
  0206940
- remove max_occ from smem()
  lh3
  committed
  1f2e27e
Commits on Jan 16, 2026
- introduce k-mer cache
  lh3
  committed
  7ef7b6d
- count k-mers
  lh3
  committed
  51852a5
Commits on Jan 15, 2026
- experimenting an alternative index
  lh3
  committed
  4f8b453
Commits on Jan 10, 2026
- add the seed subcommand (for debugging)
  lh3
  committed
  cf70543
- backup
  lh3
  committed
  74b3077
- backup
  lh3
  committed
  b5186b3
Commits on Oct 19, 2025
- option for upper interval size
  lh3
  committed
  ffe9f5f
Commits on Oct 18, 2025
- a bit code cleanup
  lh3
  committed
  12ad263
- removed sa_multi; it is slower
  lh3
  committed
  a9c4a2b
- fixed an off-by-one error
  lh3
  committed
  59108aa
- add seed subcommand
  lh3
  committed
  ddac922
- added multi-sa retrieval; not tested
  lh3
  committed
  163bfeb
Commits on Oct 17, 2025
- sa generation correct
  lh3
  committed
  3d69605
- generate SA samples; not tested
  lh3
  committed
  7559f92
- added libsais BWT construction
  lh3
  committed
  86c57a0
- code cleanup
  lh3
  committed
  2e612f5
- backup
  lh3
  committed
  deebbf7
Commits on Oct 14, 2025
- bwt I/O
  lh3
  committed
  0f35ac6
- add brief CLI
  lh3
  8 committe AA99 d
  0d24014
- backup
  lh3
  committed
  46a0f55
Commits on Oct 13, 2025
- backup
  lh3
  committed
  03ce624
- added rank11
  lh3
  committed
  2fe71f0
- revert to the bwa way
  lh3
  committed
  6a3ae00

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Commits on Sep 6, 2026

Commits on Aug 3, 2026

Commits on Jul 19, 2026

Commits on Jun 25, 2026

Commits on May 14, 2026

Commits on Jan 18, 2026

Commits on Jan 17, 2026

Commits on Jan 16, 2026

Commits on Jan 15, 2026

Commits on Jan 10, 2026

Commits on Oct 19, 2025

Commits on Oct 18, 2025

Commits on Oct 17, 2025

Commits on Oct 14, 2025

Commits on Oct 13, 2025