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History for

onaltlg-hygiene

Commits on Jun 30, 2026
- r396: fixed a few typos in CLI help messages
  lh3
  committed
  84d4135
Commits on Jun 25, 2026
- r387: more bwa-mem options exposed to 'mem'
  lh3
  committed
  a8cf4d3
- r386: add "mem" subcommand, bwa-mem compatible CLI
  lh3
  committed
  bf37862
Commits on Jun 21, 2026
- r379: added getref to get the reference from .l2b
  lh3
  committed
  a125bfd
Commits on May 1, 2026
- Remove help message from default output
  lh3
  authored
  1d5000e
- feat(cli): wire --help through subcommands
  nh13
  committed
  c319a69
Commits on Apr 20, 2026
- r262: trade accuracy for performance
  lh3
  committed
  d8e9226
Commits on Apr 9, 2026
- more help message
  lh3
  committed
  f84d610
Commits on Jan 15, 2026
- added -S and -C
  lh3
  committed
  a0b6be7
Commits on Jan 11, 2026
- merged seed to fastmap
  lh3
  committed
  e81d13a
- simplified seed API a little
  lh3
  committed
  4fd4ecc
Commits on Jan 10, 2026
- add the seed subcommand (for debugging)
  lh3
  committed
  cf70543
- backup
  lh3
  committed
  74b3077
- backup
  lh3
  committed
  b5186b3
- backup unsaved changes
  lh3
  committed
  24c1afb
Commits on Oct 19, 2025
- output real coordinates in seed
  lh3
  committed
  a1a0788
- added overall header minibwa.h
  lh3
  committed
  3c4500b
- option for upper interval size
  lh3
  committed
  ffe9f5f
- set the default sampling rate to 1/16
  lh3
  committed
  816248c
Commits on Oct 18, 2025
- a bit code cleanup
  lh3
  committed
  12ad263
- removed sa_multi; it is slower
  lh3
  committed
  a9c4a2b
- fixed an off-by-one error
  lh3
  committed
  59108aa
- batching SA queries in seed
  lh3
  committed
  7d7bc79
- add seed subcommand
  lh3
  committed
  ddac922
- multi-sa works but it is slower
  lh3
  committed
  0cbd215
- to fix multi-sa; buggy right now
  lh3
  committed
  5ad6934
- evaluate sa
  lh3
  committed
  0bd9102
- add bench
  lh3
  committed
  aa833d7
- use prefetch
  lh3
  committed
  dbe9109
Commits on Oct 17, 2025
- use libsais by default
  lh3
  committed
  2533fa7
- add a comment
  lh3
  committed
  13ecd4f
- sa generation correct
  lh3
  committed
  3d69605
- add "index"
  lh3
  committed
  97fd2c4
- generate SA samples; not tested
  lh3
  committed
  7559f92
- added libsais BWT construction
  lh3
  committed
  86c57a0

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Commits on Jun 30, 2026

Commits on Jun 25, 2026

Commits on Jun 21, 2026

Commits on May 1, 2026

Commits on Apr 20, 2026

Commits on Apr 9, 2026

Commits on Jan 15, 2026

Commits on Jan 11, 2026

Commits on Jan 10, 2026

Commits on Oct 19, 2025

Commits on Oct 18, 2025

Commits on Oct 17, 2025