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onavx2

Commits on May 27, 2026
- r352: heuristic to lower bs-seq mapq
  lh3
  committed
  2757adb
Commits on May 26, 2026
- r350: fixed a bug in seed split under --meth
  lh3
  committed
  ee27d1b
- fixed a logical error; now faster
  lh3
  committed
  6ddb7e2
- simplified the logic; equivalent code
  lh3
  committed
  c29eae1
- in the meth mode, split at disallowed mismatches
  lh3
  committed
  0f53506
Commits on May 10, 2026
- r318: revert; also disable pairing in ex-batch
  lh3
  committed
  20ed35f
- a failed experiment; will revert soon
  lh3
  committed
  a04eb42
Commits on May 8, 2026
- wip: implement meth anchor filtering in process_batch
  
  lh3
  and
  claude
  committed
  d50b37b
Commits on May 3, 2026
- r285: added mb_map_batch() for batch alignment
  
  lh3
  and
  claude
  committed
  3f9fb44
Commits on Apr 12, 2026
- implement mb_anchor_sort in seed.c
  
  lh3
  and
  claude
  committed
  71cf8f9
Commits on Jan 19, 2026
- r161: suppress a gcc warning
  lh3
  committed
  0e1d0ca
- identical output with and without batching
  lh3
  committed
  dd100cf
Commits on Jan 18, 2026
- fixed a bug in the old seeding
  lh3
  committed
  3a0fb3b
- backup; not working yet
  lh3
  committed
  e3106f7
- backup
  lh3
  committed
  4eee83b
Commits on Jan 17, 2026
- deduplicate anchors
  lh3
  committed
  72f082b
- comments only
  lh3
  committed
  0206940
- remove max_occ from smem()
  lh3
  committed
  1f2e27e
- remove duplicated seeds
  lh3
  committed
  b90c5ff
- removed the alternative seeding method
  lh3
  committed
  cd94305
- fixed a bug in the other seeding method
  lh3
  committed
  1d720ba
Commits on Jan 16, 2026
- be more careful about a corner case
  lh3
  committed
  0b77ced
- reduce memory of mb_anchor
  lh3
  committed
  cadd5c9
- batch SA retrieval for small intervals as well
  lh3
  committed
  17bf1a2
Commits on Jan 15, 2026
- tune seeding and mapq estimate
  lh3
  committed
  abc477f
Commits on Jan 12, 2026
- revamped the coordinate system to match minimap2
  lh3
  committed
  2196100
- remove spliced alignment
  lh3
  committed
  d394f8f
Commits on Jan 11, 2026
- like mm2, pos point to the last base
  lh3
  committed
  113f07b
- added sorting
  lh3
  committed
  9997452
- a safe guard, though I don't think that happens
  lh3
  committed
  5b4fde1
- make subsampling more precise
  lh3
  committed
  7724cfb
- merged seed to fastmap
  lh3
  committed
  e81d13a
- changed mb_anchor() API
  lh3
  committed
  21e78a0
- implemented anchor
  lh3
  committed
  d710f79
- simplified seed API a little
  lh3
  committed
  4fd4ecc

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Commits on May 27, 2026

Commits on May 26, 2026

Commits on May 10, 2026

Commits on May 8, 2026

Commits on May 3, 2026

Commits on Apr 12, 2026

Commits on Jan 19, 2026

Commits on Jan 18, 2026

Commits on Jan 17, 2026

Commits on Jan 16, 2026

Commits on Jan 15, 2026

Commits on Jan 12, 2026

Commits on Jan 11, 2026