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History for

onavx2

Commits on Apr 21, 2026
- r265: added Usage
  lh3
  committed
  6030fcf
Commits on Apr 20, 2026
- r262: trade accuracy for performance
  lh3
  committed
  d8e9226
Commits on Apr 19, 2026
- r260: adaptive batch size
  lh3
  committed
  d01698d
Commits on Apr 18, 2026
- allow user-provided mimalloc.o
  lh3
  committed
  65c82d1
Commits on Apr 15, 2026
- r247: reduce pri_ratio to 0.5 and simplify
  lh3
  committed
  f5bb6cf
- r246: ported mm2 part for recal dp_max
  lh3
  committed
  a024b67
- r245: further rediuce pri_ratio to 0.7
  lh3
  committed
  ca6af22
- r244: reduced long-read pri_ratio to 0.75
  lh3
  committed
  7836dc6
Commits on Apr 14, 2026
- r242: adaptive pri_ratio; sr batch size to 100m
  lh3
  committed
  613dd1f
Commits on Apr 13, 2026
- r239: reset kalloc pool when it is too large
  lh3
  committed
  7ff6eaa
Commits on Apr 12, 2026
- improve manpage and option help message
  lh3
  committed
  ac20cc2
- r234: separate sr and adap; more manpage
  lh3
  committed
  d84b1df
- expose bandwidth to CLI
  lh3
  committed
  b6ca052
- re-chaining: fix best-chain selection and related fixes
  
  lh3
  and
  claude
  committed
  6b11c1d
- r227: merged sr:adap to sr. More documentation
  lh3
  committed
  c9980fe
Commits on Apr 11, 2026
- set is_sr based on read length
  lh3
  committed
  9cd0f2c
- backup; not working properly yet
  lh3
  committed
  07ddce0
Commits on Jan 26, 2026
- select better hits for rescue
  lh3
  committed
  e9ac401
Commits on Jan 25, 2026
- implemented the full PE logic
  lh3
  committed
  c50daa0
- fixed a bug in is_rev and is_larger
  lh3
  committed
  ef7cc9f
- allow predefined PE stats
  lh3
  committed
  0168176
- backup
  lh3
  committed
  b4fc4ff
Commits on Jan 24, 2026
- r168: collect PE stats, ported from bwa
  lh3
  committed
  ae22d73
Commits on Jan 20, 2026
- r166: removed chain_skip_scale
  lh3
  committed
  fc172dc
- r165: increased bandwidth
  lh3
  committed
  fd606a8
Commits on Jan 19, 2026
- r164: parameter tuning
  lh3
  committed
  3f16158
- Removed RMQ
  lh3
  committed
  cfeb1f0
- r162: minir parameter tuning
  lh3
  committed
  b11e9c9
Commits on Jan 18, 2026
- backup
  lh3
  committed
  08f374d
Commits on Jan 17, 2026
- reduce max seed occurrence from 500 to 100
  lh3
  committed
  1712a5c
- min_ksw_len set to 20 for sr
  lh3
  committed
  9e46708
Commits on Jan 16, 2026
- handle max band width more carefully
  lh3
  committed
  9145f72
Commits on Jan 15, 2026
- invert MB_F_SR to MB_F_LONG
  lh3
  committed
  5eea028
- cleanup options
  lh3
  committed
  1e7b601
- preset to sr by default
  lh3
  committed
  e241e30

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Commits on Apr 21, 2026

Commits on Apr 20, 2026

Commits on Apr 19, 2026

Commits on Apr 18, 2026

Commits on Apr 15, 2026

Commits on Apr 14, 2026

Commits on Apr 13, 2026

Commits on Apr 12, 2026

Commits on Apr 11, 2026

Commits on Jan 26, 2026

Commits on Jan 25, 2026

Commits on Jan 24, 2026

Commits on Jan 20, 2026

Commits on Jan 19, 2026

Commits on Jan 18, 2026

Commits on Jan 17, 2026

Commits on Jan 16, 2026

Commits on Jan 15, 2026