Repository navigation

Commits

History for

onavx2

Commits on Jun 15, 2026
- r361: output SAM by default
  lh3
  committed
  343a451
Commits on May 1, 2026
- Merge pull request #4 from lh3/feat/sam-tags-ms-mc-mq
  lh3
  authored
  5b0141d
- feat(sam): add MC and MQ tags to PE SAM output
  nh13
  committed
  d7168f1
Commits on Apr 30, 2026
- fix(format): align mb_escape with bwa escape and free rg_line on success
  nh13
  committed
  1058119
Commits on Apr 16, 2026
- r248: changed the heuristic for max adjustment
  lh3
  committed
  8d00967
Commits on Apr 7, 2026
- r210: output unmapped hits; added -Y
  lh3
  committed
  c982e50
Commits on Apr 6, 2026
- r209: no negative s2:i
  lh3
  committed
  d7fff70
- SAM output mostly works but there is another bug
  lh3
  committed
  fe5247f
- ported SAM output; BUGGY right now
  lh3
  committed
  b562f10
- use unified format API for output
  lh3
  committed
  4af03af
- sam header and read group
  lh3
  committed
  4ec2d62
- prepare for SAM output
  lh3
  committed
  c6f8488
- fix wrong cs; -y working
  lh3
  committed
  95ad10e
Commits on Apr 5, 2026
- cleanup PAF output (unifinished)
  lh3
  committed
  9259c95
Commits on Jan 25, 2026
- mate rescue working, though slow
  lh3
  committed
  ea7812f
Commits on Jan 17, 2026
- output NM and cg
  lh3
  committed
  9b1e1a1
Commits on Jan 15, 2026
- output s2
  lh3
  committed
  9b92e93
- tune seeding and mapq estimate
  lh3
  committed
  abc477f
- estimate mapping quality
  lh3
  committed
  89bb3b6
Commits on Jan 14, 2026
- api to output basic paf
  lh3
  committed
  a26b757
Loading

Breadcrumbs

User selector

Datepicker

Commit history

Commits on Jun 15, 2026

Commits on May 1, 2026

Commits on Apr 30, 2026

Commits on Apr 16, 2026

Commits on Apr 7, 2026

Commits on Apr 6, 2026

Commits on Apr 5, 2026

Commits on Jan 25, 2026

Commits on Jan 17, 2026

Commits on Jan 15, 2026

Commits on Jan 14, 2026