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History for

onavx2

Commits on Apr 12, 2026
- fixed two memory leaks; there are more
  lh3
  committed
  351354c
Commits on Apr 5, 2026
- write cs/ds tag; not tested
  lh3
  committed
  f901352
Commits on Jan 19, 2026
- r161: suppress a gcc warning
  lh3
  committed
  0e1d0ca
Commits on Jan 18, 2026
- batch fastmap working
  lh3
  committed
  8b2211e
- prepare for batch fastmap
  lh3
  committed
  8d55669
- a bit cleanup and more comments
  lh3
  committed
  fa48261
- prefetch k-mer cache
  lh3
  committed
  1ec4f9c
- change stage numbers to make room for k-mer cache
  lh3
  committed
  c64a128
- refactor for upcoming changes
  lh3
  committed
  f102587
- reduce duplicated code
  lh3
  committed
  1df24f8
- fixed logical bugs with the help of AG+GP
  lh3
  committed
  c84b5e0
- Merge branch 'master' into batch
  lh3
  committed
  a039898
- fixed a bug in smem without cache
  lh3
  committed
  2339ebd
- backup
  lh3
  committed
  d020857
Commits on Jan 17, 2026
- comments only
  lh3
  committed
  0206940
- code refactoring in smem; also a tiny bit faster
  lh3
  committed
  df51fe0
- remove max_occ from smem()
  lh3
  committed
  1f2e27e
Commits on Jan 16, 2026
- restructed mb_bwt_sa_batch
  lh3
  committed
  03a09a6
- more effective prefetch for SA intervals
  lh3
  committed
  fe62c9c
- more code comments
  lh3
  committed
  4d48ab1
- introduce k-mer cache
  lh3
  committed
  7ef7b6d
- count k-mers
  lh3
  committed
  51852a5
- another ineffective optimization
  lh3
  committed
  b9b9fe9
Commits on Jan 15, 2026
- use builtin popcount by default
  lh3
  committed
  7f8769a
- describe the new BWT encoding
  lh3
  committed
  848a637
- experimenting an alternative index
  lh3
  committed
  4f8b453
Commits on Jan 10, 2026
- add the seed subcommand (for debugging)
  lh3
  committed
  cf70543
- backup
  lh3
  committed
  74b3077
- backup
  lh3
  committed
  b5186b3
Commits on Oct 19, 2025
- option for upper interval size
  lh3
  committed
  ffe9f5f
Commits on Oct 18, 2025
- a bit code cleanup
  lh3
  committed
  12ad263
- removed sa_multi; it is slower
  lh3
  committed
  a9c4a2b
- fixed an off-by-one error
  lh3
  committed
  59108aa
- batching SA queries in seed
  lh3
  committed
  7d7bc79
- add seed subcommand
  lh3
  committed
  ddac922

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Commits on Apr 12, 2026

Commits on Apr 5, 2026

Commits on Jan 19, 2026

Commits on Jan 18, 2026

Commits on Jan 17, 2026

Commits on Jan 16, 2026

Commits on Jan 15, 2026

Commits on Jan 10, 2026

Commits on Oct 19, 2025

Commits on Oct 18, 2025