8000 convert pixi lock files to conda-lock files by mashehu · Pull Request #4599 · nf-core/tools · GitHub
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convert pixi lock files to conda-lock files - #4599

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mashehu wants to merge 1 commit into
nf-core:devfrom
mashehu:convert-pixi-to-conda-lock

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@mashehu
@mashehu mashehu commented Nov 9, 2026 •
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Fixes #4597

Only problem are environment.yml files that contain pypi dependencies as these can't be converted (concerns 45 modules atm)

@mashehu mashehu added this to the 5.0.0 milestone Nov 9, 2026
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codecov Bot commented Nov 9, 2026 •
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Codecov Report

❌ Patch coverage is 92.98246% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.79%. Comparing base (cda9d01) to head (de16dd1).

Files with missing lines Patch % Lines
nf_core/modules/containers.py 92.98% 4 Missing ⚠️

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