DOE-BRIDGE

refscan Public
Command-line program that scans NMDC database for referential integrity violations

microbiomedata/refscan's past year of commit activity

Python 3 1 4 4 Updated Nov 12, 2026
nmdc-runtime Public
Runtime system for NMDC data management and orchestration

microbiomedata/nmdc-runtime's past year of commit activity

Python 7 8 149 (3 issues need help) 13 Updated Nov 12, 2026
nmdc-metadata-suggestor-ai-tool Public
A repository to that holds the code for the NMDC Submission portal metadata suggestor tool, powered by AI

microbiomedata/nmdc-metadata-suggestor-ai-tool's past year of commit activity

Python 2 2 34 6 Updated Nov 11, 2026
external-metadata-awareness Public
MongoDB + Parquet analytics for NCBI BioSample/BioProject/SRA and NMDC submission-portal metadata. Environmental triad annotation, harmonized-attribute counts, measurement discovery, value-set voting sheets.

microbiomedata/external-metadata-awareness's past year of commit activity

Jupyter Notebook 2 1 100 6 Updated Nov 11, 2026
nmdc-schema Public
National Microbiome Data Collaborative (NMDC) unified data model

microbiomedata/nmdc-schema's past year of commit activity

Python 53 CC0-1.0 16 444 (5 issues need help) 10 Updated Nov 11, 2026
submission-schema Public
The NMDC submission schema

microbiomedata/submission-schema's past year of commit activity

Python 1 MIT 3 38 4 Updated Nov 11, 2026
issues Public
public repo for issues related to NMDC work

microbiomedata/issues's past year of commit activity

Jupyter Notebook 2 2 310 1 Updated Nov 10, 2026
8AF8
nmdc-ai-eval Public
Framework and data for performing evaluations for AI-powered NMDC tools.

microbiomedata/nmdc-ai-eval's past year of commit activity

Python 2 0 47 7 Updated Nov 10, 2026
mg_annotation Public
Metagenome Annotation Workflow

microbiomedata/mg_annotation's past year of commit activity

WDL 4 8 2 2 Updated Nov 10, 2026
nmdc-server Public
Data portal client and server for NMDC.

microbiomedata/nmdc-server's past year of commit activity

Python 12 1 113 6 Updated Nov 10, 2026

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