CoReCo is a computational method for reconstructing metabolic networks of multiple species from protein sequence and phylogenetic data.
- Python
- Perl
- InterProScan
- NCBI Blast+ toolkit
- R
- Python module newick
- libsbml
See doc/CoReCoManual.pdf for installation and usage instructions.
- Pitkänen et al., Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species. PLOS Computational Biology 2014, doi:10.1371/journal.pcbi.1003465
- Castillo et al., Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction. Biotechnology for Biofuels 2016, doi:10.1186/s13068-016-0665-0