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Release 0.1.5 #391

Merged
merged 14 commits into from
Mar 18, 2020
Merged

Release 0.1.5 #391

merged 14 commits into from
Mar 18, 2020

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dweindl
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@dweindl dweindl commented Mar 18, 2020

Library:

Documentation:

dweindl and others added 14 commits March 6, 2020 16:04
and return as list as promised in doc
* data format documentation update

* visualization, typehints added
* Add PEtab support for AMICI to readme

* Update readme

Co-authored-by: Yannik Schälte <31767307+yannikschaelte@users.noreply.github.com>
* Update documentation_data_format.md

* Update documentation_data_format.md
Add links to D2D PEtab howto and pyPESTO PEtab example
Function has nothing to do with PEtab's objectives, and is not usable
at the moment. Better functionality is available through
libsbml.SBMLLocalParameterConverter. Therefore, this should be removed.
Add results for D2D and update documentation link as reported by @adrianhauber
* Update test suite results

MEIGO results as provided by Tacio Camba

* Add test results for parPE

   parpe commit 1171db84fd2465d4f39be36a334cb95a0f01677a

* Update README

* Add contribution guide (Closes #138, closes #165)

* Apply suggestions from code review

Co-Authored-By: Yannik Schälte <31767307+yannikschaelte@users.noreply.github.com>

Co-authored-by: Yannik Schälte <31767307+yannikschaelte@users.noreply.github.com>
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codecov bot commented Mar 18, 2020

Codecov Report

Merging #391 into master will increase coverage by 0.04%.
The diff coverage is 96.87%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #391      +/-   ##
==========================================
+ Coverage   77.72%   77.77%   +0.04%     
==========================================
  Files          22       22              
  Lines        2061     2070       +9     
  Branches      474      476       +2     
==========================================
+ Hits         1602     1610       +8     
- Misses        339      340       +1     
  Partials      120      120
Impacted Files Coverage Δ
petab/problem.py 73% <ø> (ø) ⬆️
petab/sbml.py 51.66% <0%> (-0.44%) ⬇️
petab/visualize/plotting_config.py 47.56% <100%> (+0.64%) ⬆️
petab/calculate.py 89.31% <100%> (ø) ⬆️
petab/version.py 100% <100%> (ø) ⬆️
petab/observables.py 96.61% <100%> (+0.31%) ⬆️
petab/visualize/helper_functions.py 88.68% <100%> (+0.1%) ⬆️
petab/visualize/plot_data_and_simulation.py 75.75% <100%> (ø) ⬆️

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@dweindl dweindl merged commit 40ca2a0 into master Mar 18, 2020
@dweindl dweindl deleted the release_0.1.5 branch March 18, 2020 14:18
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4 participants