Stars
crussmap is a faster tool to convert genome coordinates between difference reference assemblies.
Universal Single-Cell Genomics Preprocessing package
A TUI application for monitoring and managing SLURM jobs.
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance in bulk RNA-seq data.
An R package for creating Q-Q and manhattan plots from GWAS results
These scripts implement the SMR&HEIDI method to predict the promoter-anchored chromatin interactions using summary-level mQTL data.