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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 623 140

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 24 19

  3. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 14

  4. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 19 4

  5. sleap-nn sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    Python 22 11

  6. track-mjx track-mjx Public

    Jupyter Notebook 16 3

Repositories

Showing 10 of 102 repositories
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn's past year of commit activity
    Python 22 GPL-3.0 11 35 7 Updated Nov 13, 2026
  • laras-labeler Public

    Local, pose-based, human-in-the-loop behavior classifier: a lightweight modern JAABA (FastAPI + sleap-io + movement + scikit-learn)

    talmolab/laras-labeler's past year of commit activity
    Python 3 BSD-3-Clause 1 0 3 Updated Nov 13, 2026
  • luc3d Public

    LUC3D - Label Unification and Correspondence in 3D Annotation GUI

    talmolab/luc3d's past year of commit activity
    JavaScript 5 BSD-3-Clause 2 22 13 Updated Nov 12, 2026
  • sleap-app Public

    Web-based labeling GUI for SLEAP animal pose estimation and tracking

    talmolab/sleap-app's past year of commit activity
    TypeScript 3 BSD-3-Clause 1 11 2 Updated Nov 12, 2026
  • sleap-roots-analyze 8000 Public

    Standard trait analysis for traits from sleap-roots.

    talmolab/sleap-roots-analyze's past year of commit activity
    Python 0 GPL-3.0 0 85 (2 issues need help) 3 Updated Nov 12, 2026
  • sleap-roots-predict Public

    A lightweight CLI and library that uses sleap-nn for prediction and produces artifacts in the format expected by sleap-roots pipelines. Intended to interoperate with the sleap-roots model registry.

    talmolab/sleap-roots-predict's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 17 4 Updated Nov 12, 2026
  • mosquito-cfd Public

    CFD simulations of mosquito flight aerodynamics using IAMReX

    talmolab/mosquito-cfd's past year of commit activity
    Python 1 BSD-3-Clause 0 44 0 Updated Nov 12, 2026
  • STRIDE Public

    STRIDE: dual cognitive + motor phenotyping of mice from bottom-up T-maze video (SLEAP). Private pending publication.

    talmolab/STRIDE's past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 12, 2026
  • calibrat3 Public

    browser-based calibration GUI companion for luc3d

    talmolab/calibrat3's past year of commit activity
    JavaScript 0 BSD-3-Clause 1 0 3 Updated Nov 12, 2026
  • track-mjx Public
    talmolab/track-mjx's past year of commit activity
    Jupyter Notebook 16 BSD-3-Clause 3 33 6 Updated Nov 12, 2026
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