8000 k3yavi (Avi Srivastava) / Starred · GitHub
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Single Cell Biology
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Single Cell Biology

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@COMBINE-lab @satijalab @rust-bio @bioconda @czi-hca-comp-tools

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Showing results

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Rust 78,925 13,954 Updated Nov 12, 2026

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Agent skills for building with TypeSafe's System One API

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Python 27 3 Updated Oct 16, 2026

Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 20% fewer tokens for coding agents, 60-95% fewer tokens for JSON, same answers. Library, proxy, MCP server.

Python 79,459 6,217 Updated Nov 12, 2026

Makes your AI agent think like the laziest senior dev in the room. The best code is the code you never wrote.

JavaScript 189,634 10,566 Updated Oct 29, 2026

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HTML 6,836 414 Updated Nov 12, 2026

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Rust 320 73 Updated Oct 31, 2026

A rust implementation of STAR

Rust 94 9 Updated Nov 3, 2026

A privacy-first app that strips AI watermarks from content you own.

Python 27,249 3,091 Updated Nov 9, 2026

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Python 72 2 Updated Nov 12, 2026

Production-grade Rust-native trading engine with deterministic event-driven architecture

Rust 31,481 4,268 Updated Nov 12, 2026

Platform-agnostic quantification of technical noise in single-cell RNA-seq. Supports ONT, PacBio/Kinnex, and short-read 10x / BD Rhapsody / Smart-seq BAMs

Python 13 Updated Nov 12, 2026

Just like TextEdit on Mac but dedicated to Markdown.

Swift 5,981 260 Updated Nov 12, 2026

GLM-5: From Vibe Coding to Agentic Engineering

7,456 1,015 Updated Oct 15, 2026

split-seq preprocessing

Rust 5 1 Updated Jun 12, 2023

R bindings to C++ code for single-cell analysis

R 10 3 Updated Nov 3, 2026

A toolkit that makes Claude Code better at engineering — session memory, dependency analysis, large file navigation, 18 specialist agents, and crew teams for parallel multi-branch work.

Shell 93 11 Updated May 28, 2026

Web application to explore the Sequence Read Archive.

HTML 225 28 Updated Jul 17, 2025

Explore sequence datasets!

TypeScript 50 5 Updated Nov 12, 2026

Multi-modal Analysis of Transcript Isoforms in Single-Cell Sequencing Experiments

R 3 1 Updated Sep 24, 2026

Improving gene isoform quantification with miniQuant

C++ 46 4 Updated Sep 30, 2026

Make sankey, alluvial and sankey bump plots in ggplot

R 339 40 Updated Apr 4, 2024

Tool for the Quality Control of Long-Read Defined Transcriptomes

Python 283 66 Updated Oct 28, 2026

AI-Powered Bioinformatics Research Assistant. Built on OpenClaw.

TypeScript 411 53 Updated Aug 24, 2026

A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries

Rust 52 4 Updated Oct 14, 2026

Source for "The computational guide to Fiber-seq"

Python 7 3 Updated Nov 2, 2026

Visualizing transcript structure and annotation using ggplot2

R 171 10 Updated Aug 24, 2024
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