Research software engineering — precision tooling for laboratories and ML teams.
We track the scientific literature and implement what works: custom bioinformatics pipelines, hardware interfaces, machine learning systems, and rigorous scientific software methodology.
Every project is direct — you work with the technical lead from day one.
Published in Nature Communications · #11 Polish company on the Nature Index
| Product | Description | Status |
|---|---|---|
| Scipeer | AI reasoning partner for researchers — persistent knowledge graph connecting experiments, literature, and decisions so every AI session starts with full context (scipeer.io) | Private beta |
| Project | Description | Status |
|---|---|---|
| densitree | Density-normalized clustering with minimum spanning tree construction — state-of-the-art SPADE for cytometry, single-cell, and high-dimensional data | Released |
| pykinbiont | Python interface to the KinBiont.jl ecosystem — microbial growth curve analysis and kinetics tooling for Python workflows | Released |
| pamiec | Persistent, queryable memory for Claude Code — a hierarchical knowledge graph that captures people, projects, and decisions across sessions (pamiec.fuzue.tech) | Released |
| share-gpx | Self-hosted GPX trail sharing — interactive 2D map, elevation profile, and 3D first-person terrain flythrough in a single Go binary | Released |
| KinBiont.jl | Numerical methods ecosystem for microbial kinetics data analysis — growth curve fitting, model selection, and comparative analysis | Released |
| BayesBiont.jl | Bayesian companion to KinBiont.jl — NUTS sampling via Turing.jl, hierarchical pooling across replicates, PSIS-LOO model comparison (bayesbiont.fuzue.tech) | Released |
| GUIbiont | Browser-based microbial growth phenotyping from plate-reader data — QC, fitting across 30+ parametric and ODE models, trajectory clustering, batch processing; every analysis exports as an executable Julia script on KinBiont.jl (pinheirogroup.github.io/GUIbiont) | Released |
| Cytometrika | Automated, reproducible gating for flow cytometry data | In development |
| ChiBio Next | Modular rewrite of the chi.bio bioreactor operating system — hexagonal hardware abstraction, runs on real I²C hardware or a Python physics simulator (chibio-next.fuzue.tech) | In development |
Developed in collaboration with the Pinheiro Group at Human Technopole, Milan.
| Project | Description | Status |
|---|---|---|
| AI: A Living Reference | A research-oriented, continuously-updated reference for modern AI — deep learning, foundation models, LLMs, generative models, RL, agents, interpretability, alignment, causality. Content CC BY-SA 4.0; chapters revised in place (ai.fuzue.tech, source) | Living |
- Laboratory Informatics — analysis pipelines, hardware integration, flow cytometry, bioreactor interfaces, bioinformatics
- ML & Data Engineering — time series, NLP, deep learning fine-tuning, data warehouse design
- Platform Engineering — full-stack web, iOS, Android, CI/CD, server orchestration