8000 MarBL · GitHub
[go: up one dir, main page]
Skip to content
@marbl

MarBL 8000

Maryland Bioinformatics Labs

Popular repositories Loading

  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    1.1k 105

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 707 182

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 503 109

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 457 97

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 423 34

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 357 25

Repositories

Showing 10 of 48 repositories
  • MetagenomeScope Public

    Visualization tool for (meta)genome assembly graphs

    marbl/MetagenomeScope's past year of commit activity
    Python 50 GPL-3.0 10 176 0 Updated Nov 12, 2026
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko's past year of commit activity
    Python 423 34 18 0 Updated Nov 11, 2026
  • loimi Public

    Vibe-coded HPC uncompression and polishing (codex GPT-6 Astra)

    marbl/loimi's past year of commit activity
    C++ 0 MIT-0 0 0 0 Updated Nov 11, 2026
  • Pooch Public

    POOCH is a Snakemake-based pipeline for assigning chromosome labels and determining the parent of origin (maternal or paternal) of near-complete genome assemblies.

    marbl/Pooch's past year of commit activity
    Python 7 MIT 0 1 0 Updated Nov 9, 2026
  • ModDotPlot Public
    marbl/ModDotPlot's past year of commit activity
    Python 206 MIT 11 2 0 Updated Nov 3, 2026
  • rukki Public

    Extracting paths from assembly graphs

    marbl/rukki's past year of commit activity
    Rust 26 0 19 0 Updated Oct 29, 2026
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu's past year of commit activity
    C++ 707 182 3 2 Updated Oct 28, 2026
  • verkko-fillet Public

    Post-verkko graph and assembly curation in Python.

    marbl/verkko-fillet's past year of commit activity
    Jupyter Notebook 39 MIT 1 10 0 Updated Oct 24, 2026
  • HG002 Public

    A complete diploid human genome

    marbl/HG002's past year of commit activity
    164 5 2 0 Updated Oct 19, 2026
  • ModDotPlot-Browser Public

    Interactive ModDotPlot on the web browser

    marbl/ModDotPlot-Browser's past year of commit activity
    TypeScript 2 MIT-0 1 2 0 Updated Oct 19, 2026
View all repositories
0