8000 Lishijiagg (Shijia) · GitHub
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  1. MicrobTiSDA MicrobTiSDA Public

    Microbiome Time-Series Data Analysis

    R 6

  2. BacArena BacArena Public

    Forked from euba/BacArena

    agent based modelling

    R

  3. gemfitcom gemfitcom Public

    Python

  4. GEMs-BacArena GEMs-BacArena Public

    Utilizing microbial genome-scale metabolic models, personalized in silico models of the preterm infant gut microbiota were constructed to simulate and predict community-level metabolic behaviors.

    R

  5. GEMs-butyrate GEMs-butyrate Public

    Integrating the infant gut microbiota in vitro cultivation with in silico simulation to investigate species metabolic interactions.

    Jupyter Notebook 1

  6. MAG2GEM MAG2GEM Public

    A pipeline for the batch reconstruction of Genome-Scale Metabolic Models (GEMs) from Metagenome-Assembled Genomes (MAGs).

    Python

0