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History for

onv3.2.0

Commits on Mar 25, 2018
- avoided creating a dummy graph just to get minia parameters
  rchikhi
  committed
  4b0669b
Commits on Jul 5, 2017
- parameterized covmult in bulges (the 1.1)
  rchikhi
  committed
  8351461
Commits on Jul 3, 2017
- changed the format of output contigs FASTA header, now identical to BCALM, and can be converted to GFA
  rchikhi
  committed
  6136326
Commits on Jun 29, 2017
- explanations of simplifications parameters
  rchikhi
  committed
  663d34b
- exposing all graph simplifications parameters
  rchikhi
  committed
  51b0f16
Commits on Dec 8, 2016
- added command line flags to make graph simplifications optional
  rchikhi
  committed
  ee00a34
Commits on Nov 25, 2016
- added undocumented env variable MINIA_OUT_TMP to avoid specifying -out-tmp everytime
  rchikhi
  committed
  e5c2469
Commits on Aug 17, 2016
- spring cleanup of Minia's source code, now it contains only the parts needed to work with GraphUnitigs
  rchikhi
  committed
  517d3a0
Commits on Aug 9, 2016
- added contigs_to_fastg from MEGAHIT,
  rchikhi
  committed
  61d616a
Commits on Aug 2, 2016
- added git version in executable
  rchikhi
  committed
  31da63e
Commits on Jul 31, 2016
- adapted minia to graphunitigs, traversing unitigs to assemble
  rchikhi
  committed
  9d524e6
Commits on Jul 25, 2016
- towards GraphUnitigs! commit coupled with the big gatb-core july commit
  rchikhi
  committed
  fe8d9a7
Commits on Jun 2, 2016
- graph isn't const due to non-simple node caching
  rchikhi
  committed
  4d5fef3
Commits on May 26, 2016
- reverted to original debloom for k>128
  rchikhi
  committed
  f274c8b
Commits on Mar 7, 2016
- minia valgrind error uninitialized var
  rizkg
  committed
  16cbe7c
Commits on Feb 18, 2016
- minor
  rchikhi
  committed
  26e3835
Commits on Dec 16, 2015
- removed legacy minia code that we don't use anymore due to graph simplifications
  rchikhi
  committed
  0322ede
- no branching nodes with boophf either
  rchikhi
  committed
  d8b86f9
Commits on Nov 11, 2015
- some timing
  rchikhi
  committed
  083a805
Commits on Nov 8, 2015
- companion commit to the big gatb-core commit. compatibility of tools with new gatb-core
  rchikhi
  committed
  d3ebfe3
Commits on Sep 28, 2015
- immediate simplification optimizations
  rchikhi
  committed
  c1f1563
- minor
  rchikhi
  committed
  f507427
Commits on Sep 25, 2015
- rctc 4 for EC seems a better compromise n50/misassemblies than 2, for arabido at least
  Rayan
  committed
  83d7c8f
Commits on Sep 15, 2015
- minor fixes
  rchikhi
  committed
  0ffb565
- minor but essential fixes
  rchikhi
  committed
  93ab8d3
Commits on Sep 14, 2015
- tweaks for graph simpl runs
  Rayan
  committed
  b70be64
- minor
  rchikhi
  committed
  1971c24
- minor update
  rchikhi
  committed
  439791d
- implemented EC removal for minia
  rchikhi
  committed
  37b1f9c
Commits on Sep 12, 2015
- in the process of implementing EC removal. some code and test cleanup
  rchikhi
  committed
  2862321
Commits on Aug 22, 2015
- fixed segfault during bulge removal (when a tip is still present)
  rchikhi
  committed
  f7bedd6
Commits on Aug 13, 2015
- removed -graph parameter for minia now that -in has this same functionality (and even extended)
  rchikhi
  committed
  1db17eb
Commits on Jun 2, 2015
- fixed crash when mphf=none
  rchikhi
  committed
  bfa5f05
Commits on May 20, 2015
- allow double-tips to be removed (those with nothing in but many out)
  rchikhi
  committed
  ae2580d
Commits on May 19, 2015
- not-so-clean code for showing how bulge traversal fails: mostly too complex paths, not surprising
  rchikhi
  committed
  89ccc6d

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Commit history

Commits on Mar 25, 2018

Commits on Jul 5, 2017

Commits on Jul 3, 2017

Commits on Jun 29, 2017

Commits on Dec 8, 2016

Commits on Nov 25, 2016

Commits on Aug 17, 2016

Commits on Aug 9, 2016

Commits on Aug 2, 2016

Commits on Jul 31, 2016

Commits on Jul 25, 2016

Commits on Jun 2, 2016

Commits on May 26, 2016

Commits on Mar 7, 2016

Commits on Feb 18, 2016

Commits on Dec 16, 2015

Commits on Nov 11, 2015

Commits on Nov 8, 2015

Commits on Sep 28, 2015

Commits on Sep 25, 2015

Commits on Sep 15, 2015

Commits on Sep 14, 2015

Commits on Sep 12, 2015

Commits on Aug 22, 2015

Commits on Aug 13, 2015

Commits on Jun 2, 2015

Commits on May 20, 2015

Commits on May 19, 2015