Releases

Fix a bug of wrong expected number of short reads calculated.

Allow customization of the kmer size for pseudo-alignment. Change the default values for long reads.
Optimize memory usage during alignment, now intermedidate data will swap to disk.

Fix a bug caused by lower case in reference sequence.

Add split exon output for K-value in debug option

Add new options for K-value calculation

This is the first public release of miniQuant for fast transcript quantification of short and long RNA-seq reads.

Add container image to run miniQuant and update installation instruction.

miniQuant-v1.4.1