8000 Observational Health Data Sciences and Informatics · GitHub
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Observational Health Data Sciences and Informatics

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  1. CommonDataModel CommonDataModel Public

    Definition and DDLs for the OMOP Common Data Model (CDM)

    HTML 1.1k 515

  2. Vocabulary-v5.0 Vocabulary-v5.0 Public

    Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.

    PLpgSQL 275 75

  3. Atlas Atlas Public

    ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 338 155

  4. Cyclops Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 46 36

  5. CohortMethod CohortMethod Public

    An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 94 69

  6. PatientLevelPrediction PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    R 227 97

Repositories

Showing 10 of 398 repositories
  • OhdsiReportGenerator Public

    Code to extract data from the OHDSI results structure and generate plots, presentations and reports

    OHDSI/OhdsiReportGenerator's past year of commit activity
    R 1 4 2 2 Updated Nov 13, 2026
  • StudyStudio Public

    [under development] Offline, browser-only workspace for OHDSI Strategus network studies: distribute pinned protocols, audit small cells at each site, seal and verify StudyPacks, and record site dispositions.

    OHDSI/StudyStudio's past year of commit activity
    TypeScript 1 Apache-2.0 0 0 0 Updated Nov 13, 2026
  • ShinyProxyDeploy Public

    Deploy OHDSI Shiny apps to results.ohdsi.org

    OHDSI/ShinyProxyDeploy's past year of commit activity
    0 4 0 1 Updated Nov 13, 2026
  • Can-BUILD-app Public

    Shiny app docker build for Can-BUILD results viewer

    OHDSI/Can-BUILD-app's past year of commit activity
    Dockerfile 0 Apache-2.0 0 0 0 Updated Nov 13, 2026
  • WebAPI Public

    OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    OHDSI/WebAPI's past year of commit activity
    Java 154 Apache-2.0 184 133 (1 issue needs help) 36 Updated Nov 13, 2026
  • Cyclops Public

    Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    OHDSI/Cyclops's past year of commit activity
    C++ 46 36 9 0 Updated Nov 13, 2026
  • Pegasus Public

    Phenotype Evaluation and Generation by AI-assisted Synthesis & User Specifications

    OHDSI/Pegasus's past year of commit activity
    R 2 0 0 0 Updated Nov 13, 2026
  • PatientLevelPrediction Public

    An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

    OHDSI/PatientLevelPrediction's past year of commit activity
    R 227 97 41 (1 issue needs help) 5 Updated Nov 13, 2026
  • WaveformWG Public

    Repository to support activities of the OHDSI Waveform Workgroup

    OHDSI/WaveformWG's past year of commit activity
    Python 4 Apache-2.0 1 8 0 Updated Nov 13, 2026
  • Hecate Public

    Semantic search engine for OHDSI vocabulary

    OHDSI/Hecate's past year of commit activity
    Rust 21 Apache-2.0 5 1 0 Updated Nov 13, 2026
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