Lists (3)
Stars
A library for QC report based on MultiQC framework
Tutorial on large language models for genomics
Python bindings to access bruker mass spec data
nf-core / quantms
Forked from bigbio/quantmsQuantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
PRIDE Resources Forum (https://github.com/PRIDE-Archive/pride-resources/discussions)
Filter a VCF to discard false positive variants
Covid19 - Dashboard for Cuba
Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
This is the development home of the workflow management system Snakemake. For general information, see
Harmonise GWAS summary statistics against a reference VCF
Workflows for processing summary statistics files for Open Targets Genetics
Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019"…
Workflow to analyze the quality of mass spectrometry proteomics experiments based on multivariate quality control metrics.
A parser for Google Scholar, written in Python
Flask REST API for Open Targets Platform
Base Classes and Functions for Mass Spectrometry and Proteomics
A curated list of nextflow based pipelines
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦