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PySCF v2.15.0 release

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@github-actions github-actions released this 05 Nov 05:34
19ab194
  • Added
    • Internally contracted CASPT2, including density fitting and IPEA shift (#3401)
    • Analytic nuclear gradients for spin-restricted DF-CCSD and DF-CCSD(T), including auxiliary basis response (#3426)
    • Analytic nuclear gradients for GHF with spin-free Hamiltonians and GKS with collinear XC functionals (#3420)
    • TREXIO interface transferred from PySCF-forge to pyscf.tools (#3454)
    • Secondary grids for SCF response functions, configurable through set_second_grids (#3439)
    • ASE density of states interface (#3376)
    • pob-DZVP-rev2 and pob-TZVP-rev2 all-electron solid-state basis sets (#3337)
    • Support specifying the solvent name in PCM, ddCOSMO and ddPCM (#3416, #3541)
    • Restricted open-shell MP2 (ROMP2), including density fitting (#3471)
    • Particle-particle RPA (ppRPA) module transferred from PySCF-forge to PySCF core (#3478)
    • Frozen natural orbitals for molecular and periodic post-HF calculations through the ADC module (#3462)
    • Spin-orbit coupling with GTH pseudopotentials (#3436)
    • COACH functional (#3475)
    • Hirshfeld and CM5 atomic charges (#3534)
    • Mayer bond orders and Wiberg bond indices (#3533)
    • EOM-EE-CCSD singlet transition dipoles, oscillator strengths and excited-state analysis (#3480)
    • Transition multipoles, oscillator strengths, natural transition orbitals and excited-state analysis for GHF/GKS TDDFT (#3490)
    • Relaxed density matrices and dipole moments from CCSD and CCSD(T) gradient objects (#3477)
    • Triplet A and B matrices in RHF/RKS get_ab (#3482)
    • Quasi-RRHO entropy and enthalpy options, including a molecule-specific average moment of inertia (#3491, #3544)
    • Composite B97-3c, r2SCAN-3c and wB97X-3c methods through the dft3c interface (#3403)
    • Outlying charge correction for C-PCM and COSMO in COSMO-RS exports (#3421)
  • Improvements
    • Faster Gamma-point PBC RCCSD using the optimized real CCSD kernel (#3452)
    • Improved efficiency of SA-CASSCF nuclear gradients, including density fitting (#3444)
    • Use the optimized AFT algorithm when kpts_band is a subset of kpts (#3392)
    • Updated pbc.tools.precompute_exx for exchange singularity corrections and band calculations (#3412)
    • Updated SAP potentials from fractionally occupied exchange-only LDA calculations (#3367)
    • Faster RCCSD(T) lambda and response-density intermediates using C kernels (#3470)
    • Batched KMP2 kernel (#3498)
    • Improved finite-difference Hessians, convergence checks and excited-state tracking (#3428)
    • Pass Hessian logging settings to the CPHF solver (#3531)
    • Report installed PySCF extension paths in system information (#3526)
    • Removed obsolete nao and icmpspt installation extras (#3501)
  • Fixes
    • Missing orbital-rotation response terms in ROHF and KROHF second-order SCF solvers (#3448)
    • State-specific CASCI/CASSCF MC-PDFT, including excited-state density matrices with DMRG solvers (#3440)
    • KMP2 frozen-orbital masks now exclude orbitals marked with INVALID_ORBITAL_ENERGY (#3451)
    • Recover the full Monkhorst-Pack mesh for meta-Lowdin population analysis in KRHF, KUHF and KGHF (#3450)
    • Corrected Ba polarization shells in def2 and ma-def2 basis sets, missing Mn f shells and I f/g exponents in def2-QZVPD and def2-QZVPPD (#3382)
    • UHF non-convergence messages report the actual number of completed cycles
    • Unsupported DF-UCCSD analytic gradients now raise NotImplementedError instead of returning gradients inconsistent with the density-fitted energy (#3426)
    • Premature Krylov termination in CPHF and UCPHF for near-dependent right-hand sides (#3334)
    • Krylov projected systems with nonorthogonal trial vectors and per-right-hand-side fallback for difficult multi-root solves (#3549, #3384)
    • Basis projection and MINAO initial guesses with nearly linearly dependent basis sets (#3333)
    • X2C analytic gradients and Hessians with finite nucleus models (#3397)
    • X2C diagonalization fallback for nearly linearly dependent basis sets (#3405)
    • EOM-GCCSD star corrections for degenerate roots (#3404)
    • Mixed-spin block of the UCCSD(T) response density (#3387)
    • KRPA/KURPA occupation handling, exact exchange and momentum conservation for shifted k-point meshes (#3385, #3408)
    • Use the solvent optical dielectric constant in non-equilibrium TDDFT (#3386)
    • L-PDFT CI vectors with state-average mix solvers and gradient initialization (#3432, #3345)
    • CASCI/CASSCF gradients when the reference calculation has not yet been run (#3394)
    • Normalize the initial CIAH trial vector to prevent premature termination (#3406)
    • KUHF occupations when there are no beta electrons (#3348)
    • Nuclear energy evaluation with the PBC RSJK builder (#3388)
    • Integer overflow in AFT orbital-pair counts (#3356)
    • Shape handling for spinor four-center integrals (#3370)
    • Stack overflow in relativistic direct J/K screening (#3369)
    • Incorrect broadcasting in ft_ao and ft_aopair for a single reciprocal-space vector (#3340)
    • POSCAR reader (#3364)
    • Reduce Coov symmetry to C2v (#3422)
    • Allow get_fock without arguments when dynamic level shifting is enabled (#3063)
    • PYSCF_DISABLE_EVAL environment variable to disable eval-based behavior (#3363)
    • Non-canonical MP2 singles c 8000 ontributions to energies and one-particle density matrices (#3471)
    • CCSD(T) gradients now solve the (T) lambda equations when multipliers are not supplied (#3469)
    • Consistent range separation of auxiliary-basis metrics in DF gradients and Hessians (#3435, #3446)
    • Empty shell blocks in MP2, CCSD and multiconfigurational gradients with small memory limits (#3545)
    • Saturated DFT grid-response derivatives and small denominators (#3525)
    • Unsupported grid response in RKS/UKS Hessians now raises NotImplementedError (#3502)
    • Symmetrize the Hessian before diagonalization in harmonic analysis (#3507)
    • PCM intermediates now respect max_memory (#3509)
    • Density and energy corrections in CASSCF with solvent (#3503)
    • Selected CI with an empty spin channel; exposed as_SCIvector (#3481)
    • SCF conversions with fractional occupations and closed-shell ROHF (#3474)
    • GHF get_jk for molecular and periodic calculations (#3524)
    • Unsupported smearing in second-order SCF and KROHF/KROKS now raises an error; corrected UHF LUMO reporting (#3526)
    • Preserve the MINAO initial-guess electron count for ECP atoms (#3543)
    • ECP sanity checks for non-symbol atom keys and ECP replication in periodic supercells (#3542)
    • KMP2 orbital padding (#3527)
    • FFTDF and AFTDF meshes after reset (#3473)
    • UGWAC Fermi energy with smearing (#3551)
    • MP2 auxiliary-basis selection for 6-311G** (#3539)
    • Linear dependence in CABS projection (#3460)
    • TREXIO AO integral ordering, ECP handling and imported basis normalization (#3463, #3467)
    • Cube-file box vectors, odd-electron molecule reads and overlapping output columns for large structures (#3488, #3499, #3506)
    • Molden spherical d/f function declarations (#3497)
    • MC-PDFT energy logger formatting (#3492)
    • Linear-algebra exception handling in DIIS (#3516)
    • Sigma-state reflection symmetry in the Dooh/Coov cylindrical-symmetry FCI solver (#3519)
    • Clear stale ECP, pseudopotential, atom, basis and symmetry data when rebuilding Mole/Cell (#3532)
    • Fix AGF2 complex matrix-vector products (#3532)
    • Molecular GW diagonal self-energies now evaluate each frequency separately (#3532)
    • Unrestricted exact-GW static corrections apply to every orbital (#3532)
    • Periodic GW linearized density matrices now include the missing G0 contribution. (#3532)
    • Periodic DF Coulomb matrices retain imaginary contributions from complex non-Hermitian Gamma-point transition densities (#3532)
    • Reusable ddPCM solver helper calls and experimental SMD gradient imports (#3532)
    • Prevent out-of-bounds factorial-table reads in high-angular-momentum ECP derivatives (#3532)
    • Periodic meta-GGA kinetic-energy density with negative occupations (#3532)
  • API Updates
    • Python 3.9 or newer is required (#3500)
    • Updated libcint to 6.2.0 and LibXC to 7.1.2 (#3523, #3336)
    • MP2 update_amps now takes (mp, t1, t2, eris) instead of (mp, t2, eris) and returns (t1, t2) (#3471)
    • Non-canonical MP2 includes T1 singles by default (#3471)
    • mp.MP2 with an ROHF reference now returns ROMP2 or DFROMP2 instead of UMP2 (#3471)
    • Smearing SCF convergence uses the free-energy change and orbital gradient in the main SCF loop, instead of the total-energy change (#3410)
    • Restored standard auxiliary-basis normalization for periodic range-separated density fitting (#3510)
    • Density-matrix keyword for SCF response functions (#3415)
    • Add NumInt.is_hybrid_xc and NumInt.is_nlc to replace the direct calls to functions in the libxc module (#3396)

PySCF v2.14.0 release

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@github-actions github-actions released this 18 Jul 22:21
c63a953
  • Added
    • Gamma-point G0W0 for GWAC
    • Bethe-Salpeter equation (BSE) for molecular GW module. Support both spin-restricted and spin-unrestricted.
    • KRPA/KURPA: new routine for spin-restricted/unrestricted k-point RPA
    • PBC RPA for smeared systems
    • RCCSDT(Q) correction implementation
    • MC26 and COF26 on-top functionals
    • normalize CF22D functional and enable its built-in D3 dispersion
    • spin-orbit coupling (SOC) Hamiltonian for GCCSD
    • Implement CABS Singles correction (#3265)
    • symmetry breaking via homo-lumo-mixing (#3271)
    • Nuclear Gradients of GTH PP for molecules
    • qavg-vSZPs basis and ecp-q-vSZP
    • Analytic gradients for CASCI with UHF/RKS/UKS orbitals
    • self-consistent dipole corrections for slab/2D systems (#3260)
  • Improvements
    • Windows support: DLL wrapper, compatibility
    • GW improvements, including
      • PBC G0W0 (#3222). Improve CPU and memory efficiency for KRGWAC and KUGWAC.
      • GW improvements: self-consistent PBC GW routines (#3244)
      • molecular GW routines (#3236)
    • Support complex orbitals in GCCSD
    • gto/ecp: fix premature convergence in radial quadrature at large exponents (#3250)
    • Refactoring high-order CC implementations
    • KRPA and KURPA: improve the numerical stablity of ACFD EXX
    • SCF logging and add HOMO-LUMO gap reporting (#3281)
    • Make wb97x-d4 configurable. DFTD4 recommended variants can be enabled by the parameter dispersion.DFTD4_RECOMMENDATIONS.
    • Molecular Pipek-Mezey localization code refactored.
    • Pipek-Mezey Wannier functions for PBC k-point orbitals constructed using CIAH algorithm. Wannier interpolation for PBC k-point calculations.
    • allow customizing functionals by param name.
  • Fixes
    • Load basis sets from the Basis Set Exchange (BSE) when elements are missing from local .dat files
    • init_guess_by_mod_huckel function can now be called without arguments
    • fixed memory over allocation in PCM gradients (fixes #3246)
    • Fixed KeyError for MM ECPs in project_to_atomic_orbitals (#3243)
    • Molden parser now handles files without the Sym field
    • pbc/df: chunk kpt-pairs in CCGDFBuilder.outcore_auxe2 to avoid OOM (#3257)
    • Atomic approximation for GHF X2C
    • meta-GGA second derivative ordering for custom XC
    • bad atomic radii assigned to ghost atom, which causes a bad Becke partition and a negative BSSE (#3302)
    • density fitting UKS hessian

PySCF v2.13.1 release

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@github-actions github-actions released this 03 Jun 22:49
f3754ed
  • Fixes
    • Missing CP2K basis set data in wheel distributions
    • Small-rotor error.
    • Corrected SG1 grid radii handling for ghost atoms.
    • Fixed ECP loading to correctly fall back to Basis Set Exchange when local data is unavailable.

PySCF v2.13.0 release

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@github-actions github-actions released this 21 Apr 14:49
e620426
  • Added
    • ASE band structure interface
    • SOC-ECP for PBC DFT methods
    • get_rho_with_derivatives() function
    • PCM ISWIG surface discretization method
    • grid_response support for the Stratmann grid partition scheme
    • Cartesian basis support in the PCM solvent module
    • gw_ac and ugw_ac methods
    • meta-GGA support in multigrid methods (currently computed in a slower mode)
    • SGX gradients
  • Improvements
    • Warnings for basis-element mismatch
    • Updated GTH basis set and pseudopotential databases
    • Enforced real orbitals for time-reversal symmetric KSCF
    • Added sanity checks to prevent bugs in the Newton solver for PBC mean-field methods
    • Updated ccECP from pseudopotentiallibrary.org
    • Improved PBC 2c2e integral accuracy for better numerical stability in PBC-GDF methods
    • SGX implementation for improved numerical accuracy and performance
    • Canonical orthogonalization by default in the SCF eigenvalue solver
    • Support specifying "autoaux" as a key for auxiliary basis set
  • Fixes
    • RSJK initialization
    • Skipped printing of velocity and magnetic dipole moments when ECP is detected
    • mo_coeff reshape size in PBC SCF HF DF-JK
    • XYZ file parser
    • A bug where PCM assigned incorrect radii to ECP atoms
    • Inconsistent symmetry axis assignment for D₂h molecules (#2773)
    • Load default cell and k-points in KGHF.get_hcore
    • POSCAR parser bug
    • Handle ghost atoms in the QM/MM interface
    • Errors in AO values caused by an incorrect diffuseness estimator
    • Edge case involving empty arrays in DF-JK construction for PBC DF
    • Incorrect DF-MP2 energy when using jkfit in HF and rifit in MP2
    • Edge case for the frozen attribute (frozen=0)
    • PBC nuclear gradients in fft_jk.get_k_e1 with exxdiv=ewald
  • API Updates
    • Set multigrid2 as the default multigrid integrator
    • Smearing functions are moved to a separate module
    • Set default auxbasis_response level to 2 (full response) in density-fitting Hessian methods
    • Dump nelecas in mcscf chkfile
    • Allow to skip .run() for intermediate instances in method chains
    • In method pipelines, .run() of intermediate steps is now executed automatically
    • Linear dependency for orbital bases are removed by default in SCF

PySCF v2.12.1 release

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@github-actions github-actions released this 04 Feb 00:32
9b6d9c5
  • Fixes
    • NumPy 2.4.0 compatibility issue caused by mixing of scalar and 1D array
  • Improvements
    • Optimization function for improved convergence and stability in smearing.

PySCF v2.12.0 release

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8000
@sunqm sunqm released this 21 Jan 01:35
477a96a
  • New Features
    • Velocity gauge integrals and oscillator strengths for TDSCF using GTH basis sets
    • High Performance CCSDT and CCSDTQ Implementation (T1-dressed formalism)
    • GHF stability_slow
    • Density fitting implementation for the NEVPT2
  • Improved
    • Adjust UHF and ROHF analyze() to be compatible with msym
    • Evaluate pseudo potential nonlocal term gradient on real space, the same as corresponding Fock evaluation
    • Improve GPU4PySCF interface
    • In pseudopotential nonlocal term gradient, if large imaginary is found, print warning instead of raise error
    • Improve PBC DFT instantiation
    • support complex vector for fci.direct_spin1 solver
    • Reduced memory usage for pbc RSGDF
    • Configurable einsum backend, supporting pytblis, tlibs-einsum and tensordot
  • Fixes
    • KRHF gradients when exxdiv='ewald'
    • segfault for qcint backend
    • fix a bug in x2c, where imag part has been deprecated.
  • New Features and Improvements in the Molecular ADC Module
    • Expanded 1-RDM Functionality:
      • Introduced 1-RDM calculation functions for CVS-IP-RADC, CVS-IP-UADC, EE-RADC, and EA-UADC methods.
      • Enhanced reference 1-RDM calculation function in UADC.
      • Updated 1-RDM functions in IP-UADC and EE-UADC to include contributions up to ADC(3).
    • Expanded oscillator strengths Functionality:
      • Enabled oscillator strengths calculation for EE-RADC.
      • Introduced get_properties function for EE-RADC.
      • Updated get_trans_moments function EE-UADC to include contributions from 3rd order singlet excited amplitudes
    • Advanced Orbital Control:
      • Implemented frozen orbital functionality across all ADC cases, offering greater computational efficiency and control.
    • Improved Initial Guess Strategies for ADC:
      • Added CIS initial guess options for EE-UADC and EE-RADC.
      • Introduced user-defined initial guess capabilities for all ADC methods, providing increased flexibility.
    • Enhanced Analysis and Output:
      • Integrated analyze_eigenvector function into EE-UADC, EE-RADC, CVS-IP-RADC, and CVS-IP-UADC for detailed analysis.
      • Added analyze_spec_factor for EE-RADC.
      • Updated analyze function for CVS-IP-RADC, CVS-IP-UADC, EE-RADC, and EA-UADC methods.
      • Improved logging in kernel and kernel_gs functions (UADC and RADC) to report the number of frozen and active orbitals.
    • Bug Fixes
      • Resolved a bug in 1-RDM functions that occurred when approx_trans_moments was set to True.
      • Fixed merge conflicts.
    • General Improvements
      • Replaced long floating-point numbers with fractional representations for improved precision and readability.

PySCF v2.11.0 release

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@github-actions github-actions released this 21 Oct 17:53
3083700
  • Added
    • MCPDFT, XMS-PDFT, CMS-PDFT, and L-PDFT
    • Analytical Gradients for CASSCF-PDFT, SA-CASSCF-PDFT, CMS-PDFT, and L-PDFT
    • Non-adiabatic coupling vector for CMS-PDFT
    • QM/MM interface for PBC systems.
    • Analytical nuclear gradients for DFT+U methods
    • Gaussian charge models for MM particles in QM/MM interface
    • MC25 functional parameters
    • Stress tensor for semi-local functioanlsGGA,
    • Fixed-Size APC active space selection
  • Improved
    • libxc interface for customizing functional parameters
    • Support the 'default' key in the input for the mol.ecp and grids.atom_grid
    • Print imaginary frequency as negative frequency in dump_normal_mode()
    • RHF exchange performance by preserving MO information
    • Improve performance of PM localization with Becke charges
    • Molecular density fitting RMP2 and UMP2 support PBC gamma-point mf instance
    • ASE interface to support lattice optimization and geometry optimization for PBC systems
  • Fixes
    • to_gpu interface for solvent modules
    • The mismatch exx between k-point and super-cell calculations caused by the inconsistent treatment in get_coulG and super_cell functions
    • cell.KRKS() instantiation for symmetry adapted k-points
    • Return converged == False if extra cycle in SCF is not converged
  • API changes
    • move state_average_mix to CASBase
    • Remove the misleading warning exp_to_discard

PySCF v2.10.0 release

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@github-actions github-actions released this 23 Jul 23:41
795f961
  • Added
    • Analytical hessian for vv10 functional
    • vv10 response contributions in TDDFT
    • vv10 functionals for GKS
    • Spin-seperated 4-particle density matrix for FCI
    • TDDFT with C-PCM/IEF-PCM solvents and the corresponding TDDFT analytic gradients
    • DFT+U for molecules and a linear-response method for determining U
    • Add multigrid_numint method to setup the multigrid algorithm in DFT instances.
    • Frozen orbitals for TDDFT
    • EE-ADC for spin-conserved electronic excitations
  • Improved
    • Checks and warnings for missing ECP input on heavy elements
    • Auxiliary basis set assignment based on BSE database
    • Support for user-defined basis set aliases
    • Multigrid performance for non-orthogonal lattice
    • Multigrid APIs now follow the NumInt module; multigrid is decoupled from the
      FFTDF implementation, supporting mixing of GDF and multigrid
    • The treatment of dimension=0 under PBC; the PBC dimension=0 can be called
      with FFTDF, AFTDF, GDF, Multigrid integrals now.
    • Breit and Gaunt integrals for non-hermitian density matrices, supporting the
      TDDFT computation with Breit and Gaunt interactions.
    • Low-Memory and Efficient Implementation of RCCSD(T) lambda-equation and RDM Intermediates
  • Fixes
    • transform_xc for 6th order XC derivatives
    • Subgroups of C2h
    • EXX integral computation in RSH functionals for PBC DFT with AFTDF
    • Application order of solvent models and density fitting
    • Slow convergence in GHF SOSCF
    • Bugs in the geomeTRIC interface: max iteration, convergence check, and non-standard element symbols

PySCF v2.9.0 release

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@github-actions github-actions released this 20 Apr 12:04
3ece29d
  • Added
    • Analytical PCM Hessian
    • Density fitting UCCSD
    • A general driver for finite difference gradients and hessian
  • Improved
    • Assign default auxiliary basis for def2-mtzvp and def2-mtzvpp
    • Better initial guess for smearing
    • libxc interface for passing omega in composite functionals
    • The tolerance in geometry when identifying point group symmetry
    • Adjust PBC GDF eigenvalue decomposition accuracy
    • Special treatment in PBC GDF for dimension=0 systems
    • The density matrices computation performance of fci_dhf_slow
  • Fixes
    • Dimension bug in spinor X2C code
    • C-PCM and SS(V)PE gradients
    • Complex density matrices for DFHF
    • Fixes COSMO-RS functionality
    • DF auxiliary basis assignment for ghost atoms
    • Lattice sum range issue for low-dimensional systems
    • The precision when dumping molecular geometry in fromfile/fromstring function
    • kpts_band in the rsdf method.

PySCF v2.8.0 release

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@github-actions github-actions released this 10 Jan 06:43
  • Added
    • The ccpy extension (https://github.com/piecuch-group/ccpy) which enables various Coupled cluster methods
    • COSMO-RS functionality
    • DFMP2 and RPA for UHF reference
    • Add functions to read and write Cell geometry, allowing Direct or Cartesian in VASP input
    • Add def2-mtzvp and def2-mtzvpp basis sets for 3c methods
    • libqcschema module to load qcschema json
  • Improved
    • Integral screening for Gaunt and Breit term
    • Performance and multi-threading efficiency of DFMP2 and RPA, gaining 4x - 8x speedups
    • Stability analysis for extended system, matching with molecular version
    • Update to Libxc 7.0
    • Adjust TDDFT amplitudes to follow the CIS convention
    • Accelerate DFT density and XC potential, especially for MGGA.
    • Automatically apply SCF initial guess from existing wavefunction.
    • Improve the first order derivatives of density fitting J/K matrices for non-hermitian density matrices.
    • Improve TDDFT diagonalization numerical stability.
    • Remove redundant integral computation for SR-only (such as HSE) and LR-only (such as wb97) RSH functionals
  • Fixes
    • ASE interfaces regarding to the API changes in ASE v3.11.0
    • Missing conj() for t2 amps in GCCSD and UCCSD routines
    • UCCSD damping
    • Fix biased implementation for the becke radi method.
    • Fix DFT define_xc_ interface and examples.
    • Fix SR-ERI integral screening estimator.
    • Fix CCSD two-particle density matrix for complex orbitals.
    • Take cell.rcut into account when generating becke grids for low-dimensional systems.
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