Lists (32)
AI
9 repositories
Bioimaging
5 repositories
CLI
2 repositories
Comics
1 repository
Community Process
1 repository
DEI
1 repository
Desktop 🖥️
1 repository
FAIR
5 repositories
Formats
2 repositories
Fun
4 repositories
Git
2 repositories
IDR
1 repository
Illustrations
2 repositories
Java
2 repositories
JSON
1 repository
Jupyterbooks
1 repository
Linux
2 repositories
Mastodon
2 repositories
MATLAB
1 repository
Metadata
34 repositories
NFDI
7 repositories
NGFF
46 repositories
OMERO
18 repositories
Parallel
1 repository
Python
9 repositories
RDA
1 repository
RDF
27 repositories
Sparse
2 repositories
Testing
1 repository
Tools
36 repositories
Toot
1 repository
Zarr
78 repositories
Starred repositories
The Light Microscopy (LiMi)-Model is a tiered system of metadata specifications for documenting microscopy experiments and assessing the quality of instruments and mage data.
Opens OME-Zarr (OME-NGFF v0.4 / v0.5) as SpimData for BigDataViewer and BigDataViewer-Playground.
Copybara: A tool for transforming and moving code between repositories.
Train in place on n-dimensional cloud tensors.
No-as-a-Service (NaaS) is a simple API that returns a random rejection reason. Use it when you need a realistic excuse, a fun “no,” or want to simulate being turned down in style.
A vector index built on TurboQuant, written in Rust with Python bindings
AirPods liberated from Apple's ecosystem.
Docker image designed for RDF-related tasks in automated pipelines (ETL/ELT). It packages the Apache Jena stack, Node.js, and a comprehensive set of CLI tools for RDF processing, scripting, and rea…
I use Postgres... a lot. You probably don't need more than that depending on your stage. This website will convince you.
A curated list of funding programs supporting the awesome work of Open Source maintainers.
Position statement on AI in the RSE workplace - generated from a BoF at RSECon 2025
Exploration of Zarr + DataFusion
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
👀 A modern watch command. Time machine and pager etc.
ngio is a Python library to streamline OME-Zarr image analysis workflows.
A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.
Dataframe-agnostic Zarr Storage powered by Narwhals
The UFTPD repository contains source code for the 'uftpd' file server component of the UNICORE FTP high-performance file transfer toolkit
Choose your own adventure style Presentation framework.
An OpenSeadragon tile source for the OME-Zarr bioimage file format
Bi-di conversions between ShEx and other schema languages like LinkML, SHACL, and JSON schema