Stars
Open-source replacement for Neato's discontinued cloud and mobile app.
MetaBench is a pipeline to run and benchmark metagenomics tools. It covers database construction, taxonomic binning and profiling.
Home Assistant integration for Mammotion lawn mowers
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Stop renting your intelligence. Own it with AnythingLLM. Everything you need for a powerful local-first agent experience
Hundreds of models & providers. One command to find what runs on your hardware.
Pipeline to design taxon-specific primes in defined bacterial communities.
The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond.
A single CLAUDE.md file to improve Claude Code behavior, derived from Andrej Karpathy's observations on LLM coding pitfalls.
A lightweight alternative to OpenClaw that runs in containers for security. Connects to WhatsApp, Telegram, Slack, Discord, Gmail and other messaging apps,, has memory, scheduled jobs, and runs dir…
A simplified version of Dorado built on top of S/BLOW5 format.
an open source, extensible AI agent that goes beyond code suggestions - install, execute, edit, and test with any LLM
Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)
Python pipeline for automated synteny block detection and visualization from multiple genomes.
Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.
A collection of the FMH hashes for every microbial database I can get my hands on
Leveraging Language Models for Analysis of Metagenomic Sequencing Data
TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with…
MetaflowX: A Scalable and Resource-Efficient Workflow for Multi-Strategy Metagenomic Analysis
Plugins, agents, skills, and commands for Claude Code, Codex CLI, Cursor, OpenCode, Antigravity CLI, GitHub Copilot, and Pi, written once in Markdown and adapted to each tool by generators with val…
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
There can be more than Notion and Miro. AFFiNE(pronounced [ə‘fain]) is a next-gen knowledge base that brings planning, sorting and creating all together. Privacy first, open-source, customizable an…