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AI lifecycle platform where engineers and agents track experiments, train models, and ship to production.

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A deep dive into embeddings starting from fundamentals

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Cookiecutter template for MCP server development with FastMCP

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Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering bio…

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Examples of my Claude Code infrastructure with skill auto-activation, hooks, and agents

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Best Claude Code framework that actually save time. Built by a dev tired of typing "please act like a senior engineer" in every conversation.

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A configuration framework that enhances Claude Code with specialized commands, cognitive personas, and development methodologies.

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The minimalistic document archiving platform.

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macOS inside a Docker container.

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Langflow is a powerful tool for building and deploying AI-powered agents and workflows.

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An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.

Python 31,807 3,003 Updated Sep 30, 2025

This repository contains the implementation of AutoSchemaKG, a novel framework for automatic knowledge graph construction that combines schema generation via conceptualization.

Python 848 113 Updated Apr 29, 2026

Professional AI research tool for Zotero: chat with PDFs, whole-library search, Literature Radar, AutoPilot. 30+ LLMs or local models; built-in MCP server.

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A simple, secure MCP-to-OpenAPI proxy server

Python 4,419 508 Updated May 17, 2026

🔐 Documentation/News/History/Guide on openpilot with Toyota/Lexus/Subaru with TSK/ECU SECURITY KEY/SecOC

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Tools for pooled single cell sequencing experiments: demultiplex cells, infer doublet rate, assign treatments/sgRNAs, infer ambient RNA from allele matching

C++ 8 3 Updated Aug 14, 2026

Tools to use and expand the capabilities of the original GenePT

Jupyter Notebook 8 2 Updated Jan 16, 2026

MCP implementation that enables communication between MCP servers and OpenAI-compatible LLMs

Python 333 38 Updated Mar 28, 2025

A very quick project that transforms research papers into engaging three-person discussions, offering an intuitive and thought-provoking listening experience. Perfect for podcast enthusiasts seekin…

Python 619 76 Updated Dec 9, 2024

BioFabric is an open-source network visualization tool

Java 89 12 Updated Sep 1, 2019

Swiss army knife container for vscode development environments

Go 314 34 Updated Mar 4, 2026

Information on how to set up RStudio Workbench with SLURM Launcher and Singularity

Dockerfile 23 2 Updated Aug 31, 2026

A minimal working example of running a targets workflow using Hipergator HPC via SSH

R 4 Updated Jun 2, 2022

Scripts for bioinformatics analysis of sequencing data

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ask R anything

R 83 2 Updated Feb 28, 2025

Calibrated clustering via knockoffs for single-cell genomics

R 11 Updated Feb 13, 2025
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