A repository of genomics tools, compiled from C/C++ to WebAssembly so they can run in a web browser.
| Tool | Why biowasm? |
|---|---|
| sandbox.bio | Runs command-line tools in the browser to power interactive tutorials |
| 42basepairs | Runs samtools, bedtools, bcftools and other tools to preview genomic files |
| SeqtoID (repo) | Runs htsfile and seqtk to identify data issues before file upload |
| Nanopore | In-browser basecaller, uses minimap2 and samtools after basecalling |
| ViralWasm (repo) | Runs minimap2 and ViralConsensus for viral molecular epidemiology analysis |
| CRISPRLungo (repo) | Runs minimap2 as part of a long-read CRISPR analysis pipeline |
| Datagrok (repo) | Runs kalign in the browser for multiple-sequence alignment analysis |
| bedqc (repo) | Runs bedtools in the browser to validate BED files |
| Ribbon (repo) | Runs samtools in the browser to parse, estimate coverage and subsample BAM files |
| fastq.bio (repo) | Runs fastp in the browser to evaluate sequencing data quality |
| GBIF (repo) | Runs kalign to align sequences for its sequence phylogeny dashboard charts |
| Datamonkey (repo) | Runs hyphy in the browser for molecular evolution analysis |
| json4u (repo) | Runs jq in the browser to power its JSON query feature |
| Sequence Manipulation Suite (repo) | Runs minimap2, muscle, samtools and other tools in the browser alongside its classic sequence analysis utilities |
| Wasm4Learn (repo) | Runs gawk, grep and sed in the browser for bioinformatics teaching |
| Diana (repo) | Runs samtools, bgzip and tabix in the browser to index genomes and annotations for TraDIS analysis |
| Tool | Description | Link |
|---|---|---|
| biowasm | Recipes for compiling C/C++ genomics tools to WebAssembly | This repo |
| biowasm CDN | Free server hosting pre-compiled tools for use in your apps | biowasm.com/cdn |
| Aioli | Tool for running these modules in a browser, inside WebWorkers | biowasm/aioli |
- Logo by tinygraphs
See CONTRIBUTING.md.