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Fast prokaryotic genomes annotation

Python 6 1 Updated Nov 6, 2026

reticulate-free single cell format conversion

R 223 16 Updated Jul 10, 2026

Shiny app for exploring a PCA

R 55 33 Updated Dec 21, 2023

Python package to interactively annotate histological images within a jupyter notebook

Jupyter Notebook 19 2 Updated Oct 20, 2025

Highly parallel LBP implementation

Python 8 1 Updated Mar 3, 2026

A versatile Nextflow pipeline for unsupervised image segmentation

Jupyter Notebook 7 Updated Mar 3, 2026

A python library to develop genomic data simulators

Python 4 Updated Aug 29, 2023

[MIRROR] Official Gentoo ebuild repository

Shell 1 Updated Feb 16, 2024

Easily migrate your GitHub contributions!

Python 10 3 Updated Mar 2, 2024

WireJump is a Linux-based cloud router solution, which uses WireGuard under the hood.

Go 4 2 Updated Feb 21, 2024
Python 3 Updated May 10, 2024
R 35 16 Updated Nov 7, 2026

A unifying framework for biomedical research knowledge graphs

Python 345 59 Updated Oct 15, 2026

Fast Local Binary Patterns using TensorFlow

Jupyter Notebook 8 Updated Aug 26, 2023

Codes and results from ONT dRNA benchmarking

Jupyter Notebook 12 1 Updated Nov 28, 2023
Jupyter Notebook 16 5 Updated Jan 24, 2023

Stay Focused. Take a Break.

TypeScript 4,925 213 Updated May 19, 2026

Code for Dharia NV, et al. A First-Generation Pediatric Cancer Dependency Map. Nature Genetics 2021.

HTML 9 6 Updated Jan 4, 2021

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Go 1,606 193 Updated Nov 7, 2026

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

Python 1,030 355 Updated Aug 24, 2024

Cross-platform modern C++ GUI

C++ 1,079 113 Updated Oct 29, 2026

Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022

Jupyter Notebook 54 26 Updated Jun 8, 2022

scSNV Mapping tool for 10X Single Cell Data

C++ 26 4 Updated Dec 19, 2025

Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.

C++ 52 10 Updated Feb 8, 2022
Python 12 6 Updated Oct 3, 2023

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

R 216 18 Updated Dec 10, 2025

Scrapping tool for GISAID data regarding SARS-CoV-2

Python 41 16 Updated May 22, 2023

An R package for experimental psychologists

HTML 159 33 Updated Feb 5, 2026
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