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pyFoldX: python bindings for FoldX.
Software for inferring protein stabilities from phylogenies
PoSE: (Pattern of Sequence Evolution) provides visualization and annotation of amino acid substitutions to help determine major patterns during sequence evolution of protein-coding sequences, hyper…
virologist / ggtree
Forked from YuLab-SMU/ggtree🎄Visualization and annotation of phylogenetic trees
Material for the reassortment rates across influenza viruses and pairs of segments papers
Beast2 implementation of the coalescent with reassortment
Within-host diversity in H5N1-infected humans and poultry in Cambodia
Evolution and spread of a reassortant A/H3N2 virus in the 2017-2018 influenza season
Dengue antigenic variation and evolutionary dynamics
Adapting script from https://github.com/blab/siv-cst
A pipeline for detection and extraction of accurate whole genome consensus of Influenza virus from clinical samples or primary passages
baltic - Backronymed Adaptable Lightweight Tree vIsualisation Code for molecular phylogeny manipulation, analysis and visualisation.
Modern-day SIV viral diversity generated by extensive recombination and cross-species transmission