Conversion from various formats to Ome-tiff and Ome-zarr
This tool can be used as biomero plugin, Docker container or stand-alone
- Extract and process image data including bioformats unsupported formats
- OME-Zarr
- (OME-) Tiff
- Thermo Fisher tiff files
- ImageXpress Pico
- Molecular Devices
- CellReporterXpress experiment
- image db files (.db)
- isyntax files (.isyntax)
- Incucyte archives (.icharch)
- 3DHistech files (.mrxs)
- DICOM files
- Leica files (.lif, .lof, .xlef, .xlcf, .xlif)
- all images in a file, or a single image selected by UUID
- RGB, multi-channel, Z-stack, time series and tile scans (stitched)
- Export to Ome formats
- OME-Tiff
- OME-Zarr
- Supporting
- (Large) whole slide images
- Screen Plate Well / High Content Screening format
- Compatible with Omero
Generated: deepwiki.com/NL-BioImaging/biomero-converter
Though completely human-designed and created, generative AI coding assistants were used in developing this software, including tests and documentation. All changes are directed and approved by a maintainer, and checked by automated tests where applicable.