Open Source Algorithms - Page 21
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu. -
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Enumerations
This project is no longer maintained.
This project is no longer maintained. Instead use my Java util lib: http://sourceforge.net/projects/util-lib/ -
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EpFamvir
C++ Software framework that supports data-intensive distributed apps.
* EpFamvirproject in this site is not maintained anymore. * The project has been moved to https://github.com/juhgiyo/EpFamvir EpFamvir is a Visual C++ Software framework that supports data-intensive distributed applications.. The features includes: - Famvir Distributed File System - Job Tracker and Task Tracker: the MapReduce Engine For detailed documentation, please download this full document (EPFamvir Documentation.chm) from the "Downloads" Section. * If the documentation file is not visible after finishing download. Solution 1. ** Double-click the .chm file. ** In the Open File-Security Warning dialog box, click to clear the Always ask before opening this file check box. ** Click Open. Solution 2. ** Right-click the CHM file, and then click Properties. ** Click Unblock. ** Double-click the .chm file to open the file. -
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EpLibrary
Visual C++ Utility Library
* EpLibrary project in this site is not maintained anymore. * The project has been moved to https://github.com/juhgiyo/EpLibrary EpLibrary is a utility library for Visual C++. The features includes: - Math Framework - Enhanced Binary Search - Sort - Stream Framework - Container Framework - Simple Debugger Framework - FileSystem Framework - Other Frameworks - Server/Client Template Framework - System Framework - Thread System For detailed documentation, please download this full document (EPLibrary Documentation.chm) from the "Downloads" Section. * If the documentation file is not visible after finishing download. Solution 1. ** Double-click the .chm file. ** In the Open File-Security Warning dialog box, click to clear the Always ask before opening this file check box. ** Click Open. Solution 2. ** Right-click the CHM file, and then click Properties. ** Click Unblock. ** Double-click the .chm file to open the file. -
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Ertha is an open source GIS whose main focus is to guarantee easy extensibility and straightforward integration of custom modules. It provides basic geographic rendering and topologic analysis and exposes the main data structures loaded from shapefiles.
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EvoTrader is a stock picking platform that utilizes genetic programming to evolve rules for generating stock trading signals.
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Evokit is an integrated environment for developing evolutionary computation algorithms. It is built around Java and the Eclipse platform, and will support several different libraries including ECJ.
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A self-contained, fully configurable Java "game" to simulate multi-species evolution. Design species by optionally specifying every attribute; modify any or all environmental settings; let them loose to eat, fight, procreate, die, and Evolve!
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Evolutionary Computation Framework
C++ framework for application of any type of evolutionary computation.
ECF is a framework intended for application of any type of evolutionary computation (GA/GP, DE, Clonalg, ES, PSO, ABC, GAn, local search...). It offers simplicity for the end-user (parameterless usage, tutorial) and customization for experienced EC practicioners. -
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Evolutionary.jl
Evolutionary & genetic algorithms for Julia
A Julia package for evolutionary & genetic algorithms. The package can be installed with the Julia package manager. -
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EvolutionaryComputation
Evolutionary Computation on Android
This project is a prototype of evolutionary computation algorithms implementations for Android. We, Tom BERNARD and Ugo PICHE, were asked to do this project as part of our electronic & computer science in the Polytech'Paris-UPMC engineer school, in France. We wanted to thank Mario Zechner and all contributors behind the fabulous libGDX project (https://code.google.com/p/libgdx/) which allowed us to use Box2D and OpenGL ES more, more easily than without this API. -
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Evolve is a simulation written in java that uses the Genetic Algorithm to evolve intelligent agents acting in a rich environment.
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Don't hard-code data-structures for Artificial Intelligence (AI). Evolve them (and control flow) as cycles of arrays in arrays with size constraints based on other array sizes (at specific index) in terms of range, multiply, exponent, or permutation. No working code yet. Whats there now is an extension of GigaLineCompile which would become part of Human AI Net, but there are other projects to finish before I can come back to this one.
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ExRandom
Sampling exactly from the normal and exponential distributions
ExRandom is a small header-only C++11 library for exact sampling from the normal, exponential, and discrete normal distributions (provided that the underlying generator is perfect). This library provides an implementation of the algorithms described in C. F. F. Karney, Sampling exactly from the normal distribution, ACM Trans. Math. Software 42(1), 3:1-14 (Jan. 2016), https://doi.org/10.1145/2710016, https://arxiv.org/abs/1303.6257. -
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Exact Subgraph Matching Algorithm
Exact Subgraph Matching Algorithm for Dependency Graphs
The subgraph matching problem (subgraph isomorphism) is NP-complete. We designed a simple exact subgraph matching (ESM) algorithm for dependency graphs using a backtracking approach. The total worst-case algorithm complexity is O(n^2 * k^n) where n is the number of vertices and k is the vertex degree. We have demonstrated the successful usage of our algorithm in three biomedical relation and event extraction applications: BioNLP 2011 shared tasks on event extraction, Protein-Residue association detection and Protein-Protein interaction identification. This Java implementation implements our ESM algorithm. See README file: https://sourceforge.net/projects/esmalgorithm/files/ If you use our ESM implementation to support academic research, please cite the following paper: Haibin Liu, Vlado Keselj, and Christian Blouin. Exploring a Subgraph Matching Approach for Extracting Biological Events from Literature. Computational Intelligence, 2013. -
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This is a general purpose expression evaluator which has abilities to evaluate mathematical expressions having operators: +, -, *, /, < , <=, >, >=, ==, !=, &&, ||. The enhancement to support all the other arithmetic operators is under development.
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Expressions parser and evaluator
C# classes for parsing and evaluation.
Set of C# classes for expression parsing and evaluation. Expressions may have user-defined operators, user-defined variables of any type, user-defined functions, user-defined classes with methods and properties, object constants, arrays and collections with indexes, assignment to variables and properties of objects. Supports Unicode. Name of variables, functions, methods and properties, string constants may have surrogates, diacritical combining marks. -
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"Extended Data Types for PHP" is a collection of PHP5 classes, which provide easily usable common data types like Lists, Trees or Graphs. Installation will be possible via an PEAR Channel or as local library in a website's code base.
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XSWAG (Extended SourceWare Archive Group) is a revival project for the famous SWAG code archives for the Pascal programming language. This project is open to every Pascal/Delphi programmer who wishes to contribute to the global Pascal knowledge base. Current version (testing 0.9) features : - a reader program : allows users to browse through the code archives, organizes them by type and operating system and updates the archives from multiple XSWAG servers. - a server daemon : maintains a list of archives and provides updates to clients. - a creator program : to quickly make or modify an XSWAG archive file, add/remove sources and update sources info (os, compiler, architecture, contact info, author name, subject).
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Extensible Compressed Trie
An extensible and compressed trie data structure written in C++.
An extensible and compressed trie data structure written in C++. -
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ExtraDix is a sorting algorithm based on Radixsort. It is faster than Quicksort, stable, realized in C and can sort by any basic data type. Testing was done with 1 million data records sorting char, short, int, long, float, double and strings.
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FFT for ARMv6
Fixed point 16/32 integer FFT library for the Raspberry Pi and Android
This library is being created as I have a need to do very fast FFTs on low end devices not supporting the NEON instruction set. The Raspberry Pi is an ideal candidate for developing in gcc before porting to JNI for low spec Android devices, hence it's inclusion. Fixed point 16/32 integer FFT library suitable for the Raspberry Pi and Android devices. Includes test stubs for gcc on the Raspberry Pi and a Basic4Android wrapper from JNI. It includes hand optimised ARMv6 assembler, demonstrating techniques such as pipeline stuffing to achieve maximum performance. It also demonstrates how to include large chunks of assembler inline with C/C++ thus avoiding ABI issues between platforms. -
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FJSP Software
A Software for Flexible Job Shop Scheduling
Flexible job shop scheduling problem (FJSP) is very important in many fields such as production management, resource allocation and combinatorial optimization. In the real manufacturing systems, each operation could be processed on more than one machine and each machine can also process several operations. This feature is known as flexibility. You can define your problem in this software and get an optimal solution as a Gantt Chart. This software is based on my M.Sc. thesis of Shahed university (Tehran, Iran).