| Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature methods 9 (7), 676-682, 2012 | 72342 | 2012 |
| ImageJ2: ImageJ for the next generation of scientific image data CT Rueden, J Schindelin, MC Hiner, BE DeZonia, AE Walter, ET Arena, ... BMC bioinformatics 18 (1), 529, 2017 | 6955 | 2017 |
| TrackMate: An open and extensible platform for single-particle tracking JY Tinevez, N Perry, J Schindelin, GM Hoopes, GD Reynolds, ... Methods 115, 80-90, 2017 | 3842 | 2017 |
| The ImageJ ecosystem: An open platform for biomedical image analysis J Schindelin, CT Rueden, MC Hiner, KW Eliceiri Molecular reproduction and development 82 (7-8), 518-529, 2015 | 3137 | 2015 |
| Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017 | 2695 | 2017 |
| A new metric for probability distributions DM Endres, JE Schindelin IEEE Transactions on Information theory 49 (7), 1858-1860, 2003 | 1626 | 2003 |
| TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012 | 1127 | 2012 |
| A high-level 3D visualization API for Java and ImageJ B Schmid, J Schindelin, A Cardona, M Longair, M Heisenberg BMC bioinformatics 11 (1), 274, 2010 | 669 | 2010 |
| Software for bead-based registration of selective plane illumination microscopy data S Preibisch, S Saalfeld, J Schindelin, P Tomancak Nature methods 7 (6), 418-419, 2010 | 502 | 2010 |
| Crowdsourcing the creation of image segmentation algorithms for connectomics I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ... Frontiers in neuroanatomy 9, 152591, 2015 | 425 | 2015 |
| OpenSPIM: an open-access light-sheet microscopy platform PG Pitrone, J Schindelin, L Stuyvenberg, S Preibisch, M Weber, ... Nature methods 10 (7), 598-599, 2013 | 401 | 2013 |
| Fiji-an Open platform for biological image analysis J Schindelin, I Arganda-Carrera, E Frise, K Verena, L Mark, P Tobias, ... Nat. Methods 9 (7), 676-682, 2009 | 219 | 2009 |
| A Doppler effect in embryonic pattern formation D Soroldoni, DJ Jörg, LG Morelli, DL Richmond, J Schindelin, F Jülicher, ... Science 345 (6193), 222-225, 2014 | 156 | 2014 |
| MIJ: making interoperability between ImageJ and Matlab possible D Sage, D Prodanov, JY Tinevez, J Schindelin ImageJ User & Developer Conference 2426, 2012 | 82 | 2012 |
| Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts A Cardona, S Saalfeld, I Arganda, W Pereanu, J Schindelin, V Hartenstein Journal of Neuroscience 30 (22), 7538-7553, 2010 | 72 | 2010 |
| Fiji is just ImageJ-Batteries included J Schindelin Proceedings of the ImageJ User and Developer Conference, Luxembourg, 2008 | 68 | 2008 |
| The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy A Jenett, JE Schindelin, M Heisenberg BMC bioinformatics 7 (1), 544, 2006 | 68 | 2006 |
| Trainable_Segmentation: Release v3. 1.2 I Arganda-Carreras, V Kaynig, C Rueden, J Schindelin, A Cardona, ... Zenodo, 2016 | 41 | 2016 |
| Bayesian binning beats approximate alternatives: estimating peri-stimulus time histograms D Endres, M Oram, J Schindelin, P Foldiak Advances in neural information processing systems 20, 2007 | 29 | 2007 |
| Cooperativity among Rev-associated nuclear export signals regulates HIV-1 gene expression and is a determinant of virus species tropism M Aligeti, RT Behrens, GM Pocock, J Schindelin, C Dietz, KW Eliceiri, ... Journal of virology 88 (24), 14207-14221, 2014 | 28 | 2014 |
