| NanoSim: nanopore sequence read simulator based on statistical characterization C Yang, J Chu, RL Warren, I Birol GigaScience 6 (4), gix010, 2017 | 269 | 2017 |
| LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads RL Warren, C Yang, BP Vandervalk, B Behsaz, A Lagman, SJM Jones, ... GigaScience 4 (1), s13742-015-0076-3, 2015 | 259 | 2015 |
| Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ... The Plant Journal 83 (2), 189-212, 2015 | 256 | 2015 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... Nature methods 21 (7), 1349-1363, 2024 | 210 | 2024 |
| AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens C Li, D Sutherland, SA Hammond, C Yang, F Taho, L Bergman, ... BMC genomics 23 (1), 77, 2022 | 196 | 2022 |
| Actinomycetes from Red Sea sponges: sources for chemical and phylogenetic diversity UR Abdelmohsen, C Yang, H Horn, D Hajjar, T Ravasi, U Hentschel Marine Drugs 12 (5), 2771-2789, 2014 | 103 | 2014 |
| RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes KM Nip, R Chiu, C Yang, J Chu, H Mohamadi, RL Warren, I Birol Genome research 30 (8), 1191-1200, 2020 | 79* | 2020 |
| Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art J Chu, H Mohamadi, RL Warren, C Yang, I Birol Bioinformatics 33 (8), 1261-1270, 2017 | 64 | 2017 |
| Assembly of the complete Sitka spruce chloroplast genome using 10X Genomics’ GemCode sequencing data L Coombe, RL Warren, SD Jackman, C Yang, BP Vandervalk, RA Moore, ... PloS one 11 (9), e0163059, 2016 | 57 | 2016 |
| Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2 KM Nip, S Hafezqorani, KK Gagalova, R Chiu, C Yang, RL Warren, I Birol Nature Communications 14 (1), 2940, 2023 | 42 | 2023 |
| Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes Z Xue, RL Warren, EA Gibb, D MacMillan, J Wong, R Chiu, SA Hammond, ... BMC genomics 19 (1), 536, 2018 | 40 | 2018 |
| Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data S Hafezqorani, C Yang, T Lo, KM Nip, RL Warren, I Birol Gigascience 9 (6), giaa061, 2020 | 35 | 2020 |
| Konnector v2. 0: pseudo-long reads from paired-end sequencing data BP Vandervalk, C Yang, Z Xue, K Raghavan, J Chu, H Mohamadi, ... BMC Medical Genomics 8 (Suppl 3), S1, 2015 | 25 | 2015 |
| Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph BP Vandervalk, SD Jackman, A Raymond, H Mohamadi, C Yang, ... 2014 IEEE international conference on bioinformatics and biomedicine (BIBM …, 2014 | 20 | 2014 |
| Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim C Yang, T Lo, KM Nip, S Hafezqorani, RL Warren, I Birol GigaScience 12, giad013, 2023 | 17 | 2023 |
| Terminitor: cleavage site prediction using deep learning models C Yang, C Li, KM Nip, RL Warren, I Birol bioRxiv, 710699, 2019 | 3 | 2019 |
| RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes M Stephenson, KM Nip, S HafezQorani, KK Gagalova, C Yang, ... NAR Genomics and Bioinformatics 3 (4), lqab105, 2021 | 1 | 2021 |
| Computational modelling, simulation, and prediction of biological sequences C Yang University of British Columbia, 2021 | 1 | 2021 |
| Isolation, Phylogenetic Analysis and Antibiotic Activity Screening of Red Sea Sponge-Associated Actinobacteria C Yang | 1 | 2013 |
Inanc BirolGenome Sciences Centre, BC Cancer AgencyVerified email at bcgsc.ca
