| Biclustering algorithms for biological data analysis: a survey SC Madeira, AL Oliveira IEEE/ACM transactions on computational biology and bioinformatics 1 (1), 24-45, 2004 | 2795 | 2004 |
| Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling I Medina, J Carbonell, L Pulido, SC Madeira, S Goetz, A Conesa, ... Nucleic acids research 38 (suppl_2), W210-W213, 2010 | 379 | 2010 |
| The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ... Nucleic acids research 42 (D1), D161-D166, 2014 | 292 | 2014 |
| YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenco, ... Nucleic acids research 39 (suppl_1), D136-D140, 2010 | 245 | 2010 |
| Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm SC Madeira, MC Teixeira, I Sa-Correia, AL Oliveira IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (1), 153-165, 2010 | 145 | 2010 |
| Short-term electricity load forecasting—A systematic approach from system level to secondary substations MG Pinheiro, SC Madeira, AP Francisco Applied Energy 332, 120493, 2023 | 98 | 2023 |
| BicPAM: Pattern-based biclustering for biomedical data analysis R Henriques, SC Madeira Algorithms for Molecular Biology 9 (1), 27, 2014 | 96 | 2014 |
| Triclustering algorithms for three-dimensional data analysis: A comprehensive survey R Henriques, SC Madeira ACM Computing Surveys (CSUR) 51 (5), 95, 2018 | 94 | 2018 |
| BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data JP Gonçalves, SC Madeira, AL Oliveira BMC research notes 2 (1), 124, 2009 | 93 | 2009 |
| A structured view on pattern mining-based biclustering R Henriques, C Antunes, SC Madeira Pattern Recognition 48 (12), 3941-3958, 2015 | 88 | 2015 |
| PINTA: a web server for network-based gene prioritization from expression data D Nitsch, LC Tranchevent, JP Goncalves, JK Vogt, SC Madeira, Y Moreau Nucleic acids research 39 (suppl_2), W334-W338, 2011 | 81 | 2011 |
| A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series SC Madeira, AL Oliveira Algorithms for Molecular Biology 4 (1), 8, 2009 | 81 | 2009 |
| BicPAMS: Software for biological data analysis with pattern-based biclustering R Henriques, FL Ferreira, SC Madeira BMC Bioinformatics 18 (1), 82, 2017 | 78 | 2017 |
| A linear time biclustering algorithm for time series gene expression data SC Madeira, AL Oliveira Algorithms in Bioinformatics, 39-52, 2005 | 73 | 2005 |
| Neuropsychological predictors of conversion from mild cognitive impairment to Alzheimer’s disease: a feature selection ensemble combining stability and predictability T Pereira, FL Ferreira, S Cardoso, D Silva, A de Mendonça, M Guerreiro, ... BMC Medical Informatics and Decision Making 18 (1), 1-20, 2018 | 68 | 2018 |
| Predicting progression of mild cognitive impairment to dementia using neuropsychological data: A supervised learning approach using time windows T Pereira, L Lemos, S Cardoso, D Silva, A Rodrigues, I Santana, ... BMC Medical Informatics and Decision Making 17 (1), 110, 2017 | 68 | 2017 |
| Spreading in ALS: The relative impact of upper and lower motor neuron involvement M Gromicho, M Figueiral, H Uysal, J Grosskreutz, M Kuzma‐Kozakiewicz, ... Annals of Clinical and Translational Neurology, 2020 | 67 | 2020 |
| BicSPAM: Flexible biclustering using sequential patterns R Henriques, SC Madeira BMC bioinformatics 15 (1), 130, 2014 | 56 | 2014 |
| BSig: Evaluating the statistical significance of biclustering solutions R Henriques, SC Madeira Data Mining and Knowledge Discovery 32 (1), 124-161, 2017 | 55 | 2017 |
| BicNET: flexible module discovery in large-scale biological networks using biclustering R Henriques, SC Madeira Algorithms for Molecular Biology 11 (1), 14, 2016 | 52 | 2016 |
Arlindo L OliveiraDistinguished Professor, Instituto Superior Técnico / INESC-IDVerified email at tecnico.ulisboa.pt
