| The transcriptome and DNA methylome landscapes of human primordial germ cells F Guo, L Yan, H Guo, L Li, B Hu, Y Zhao, J Yong, Y Hu, X Wang, Y Wei, ... Cell 161 (6), 1437-1452, 2015 | 674 | 2015 |
| Protein sequence design by conformational landscape optimization C Norn, BIM Wicky, D Juergens, S Liu, D Kim, D Tischer, B Koepnick, ... Proceedings of the National Academy of Sciences 118 (11), e2017228118, 2021 | 231* | 2021 |
| Unraveling the functional dark matter through global metagenomics GA Pavlopoulos, FA Baltoumas, S Liu, O Selvitopi, AP Camargo, ... Nature 622 (7983), 594-602, 2023 | 179 | 2023 |
| Advances in chromatin and chromosome research: perspectives from multiple fields AA Agbleke, A Amitai, JD Buenrostro, A Chakrabarti, L Chu, AS Hansen, ... Molecular cell 79 (6), 881-901, 2020 | 72 | 2020 |
| From 1D sequence to 3D chromatin dynamics and cellular functions: a phase separation perspective S Liu, L Zhang, H Quan, H Tian, L Meng, L Yang, H Feng, YQ Gao Nucleic acids research 46 (18), 9367-9383, 2018 | 66 | 2018 |
| DNA methylation landscape reflects the spatial organization of chromatin in different cells L Zhang, WJ Xie, S Liu, L Meng, C Gu, YQ Gao Biophysical journal 113 (7), 1395-1404, 2017 | 65 | 2017 |
| Structural modeling of chromatin integrates genome features and reveals chromosome folding principle WJ Xie, L Meng, S Liu, L Zhang, X Cai, YQ Gao Scientific reports 7 (1), 2818, 2017 | 53 | 2017 |
| Integrated structure prediction of protein–protein docking with experimental restraints using ColabDock S Feng, Z Chen, C Zhang, Y Xie, S Ovchinnikov, YQ Gao, S Liu Nature Machine Intelligence 6 (8), 924-935, 2024 | 33* | 2024 |
| Rich dynamics underlying solution reactions revealed by sampling and data mining of reactive trajectories J Zhang, Z Zhang, YI Yang, S Liu, L Yang, YQ Gao ACS central science 3 (5), 407-414, 2017 | 25 | 2017 |
| Chromatin structure changes during various processes from a DNA sequence view H Quan, Y Yang, S Liu, H Tian, Y Xue, YQ Gao Current Opinion in Structural Biology 62, 1-8, 2020 | 21 | 2020 |
| Computational characterization of domain‐segregated 3D chromatin structure and segmented DNA methylation status in carcinogenesis Y Xue, Y Yang, H Tian, H Quan, S Liu, L Zhang, L Yang, H Zhu, H Wu, ... Molecular Oncology 16 (3), 699-716, 2022 | 18* | 2022 |
| PSP: million-level protein sequence dataset for protein structure prediction S Liu, J Zhang, H Chu, M Wang, B Xue, N Ni, J Yu, Y Xie, Z Chen, M Chen, ... arXiv preprint arXiv:2206.12240, 2022 | 16 | 2022 |
| Progressive domain segregation in early embryonic development and underlying correlation to genetic and epigenetic changes H Quan, H Tian, S Liu, Y Xue, Y Zhang, W Xie, YQ Gao Cells 10 (10), 2521, 2021 | 15* | 2021 |
| NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes FA Baltoumas, E Karatzas, S Liu, S Ovchinnikov, Y Sofianatos, IM Chen, ... Nucleic Acids Research 52 (D1), D502-D512, 2024 | 14 | 2024 |
| Toward an understanding of the relation between gene regulation and 3D genome organization H Tian, Y Yang, S Liu, H Quan, YQ Gao Quantitative Biology 8 (4), 295-311, 2020 | 13 | 2020 |
| Unsupervisedly prompting AlphaFold2 for accurate few-shot protein structure prediction J Zhang, S Liu, M Chen, H Chu, M Wang, Z Wang, J Yu, N Ni, F Yu, ... Journal of Chemical Theory and Computation 19 (22), 8460-8471, 2023 | 12 | 2023 |
| Assisting and accelerating NMR assignment with restrained structure prediction S Liu, H Chu, Y Xie, F Wu, F Mu, J Wei, N Ni, C Wang, J Zhang, M Chen, ... Communications Biology 8 (1), 1067, 2025 | 4 | 2025 |
| Disentanglement of Evolutionary Constraints in Statistical Models of Proteins H Wang, S Feng, K Tsuboyama, S Liu, GJ Rocklin, S Ovchinnikov PRX Life 2 (2), 023005, 2024 | 4* | 2024 |
| Integrating diverse experimental information to assist protein complex structure prediction by GRASP Y Xie, C Zhang, S Li, X Du, Y Lu, M Wang, Y Hu, Z Chen, S Liu, YQ Gao Nature Methods 22 (11), 2362-2374, 2025 | 3* | 2025 |
| 1d sequence based 3d chromatin phase separation: Forces, processes, and functions S Liu, H Quan, H Tian, R Zhou, L Yang, YQ Gao Acta Physico-Chimica Sinica 36 (1), 1907010-0, 2020 | 1 | 2020 |
