| Proteingym: Large-scale benchmarks for protein fitness prediction and design P Notin, A Kollasch, D Ritter, L Van Niekerk, S Paul, H Spinner, N Rollins, ... Advances in Neural Information Processing Systems 36, 64331-64379, 2023 | 366 | 2023 |
| ProteinNPT: Improving protein property prediction and design with non-parametric transformers P Notin*, R Weitzman*, D Marks, Y Gal Advances in Neural Information Processing Systems 36, 33529-33563, 2023 | 60 | 2023 |
| Rnagym: Large-scale benchmarks for rna fitness and structure prediction R Arora, M Angelo, CA Choe, CA Shearer, AW Kollasch, F Qu, ... bioRxiv, 2025.06. 16.660049, 2025 | 5* | 2025 |
| Protriever: End-to-End Differentiable Protein Homology Search for Fitness Prediction R Weitzman, PM Groth, L Van Niekerk, A Otani, Y Gal, D Marks, P Notin ICML, 2025 | 5 | 2025 |
| A Diffusion Model to Shrink Proteins While Maintaining their Function E Baron*, AN Amin*, R Weitzman, DS Marks, AG Wilson The Exploration in AI Today Workshop at ICML 2025, 2025 | 1 | 2025 |
| Promoter Sequence Generation using Homology Prompting E Xie*, CA Shearer*, R Weitzman*, P Notin, DS Marks ICML 2025 Generative AI and Biology (GenBio) Workshop, 0 | | |