| Structured pruning of large language models Z Wang, J Wohlwend, T Lei Proceedings of the 2020 conference on empirical methods in natural language …, 2020 | 372 | 2020 |
| Boltz-1 democratizing biomolecular interaction modeling J Wohlwend, G Corso, S Passaro, N Getz, M Reveiz, K Leidal, ... BioRxiv, 2024.11. 19.624167, 2025 | 296 | 2025 |
| Sybil: A validated deep learning model to predict future lung cancer risk from a single low-dose chest computed tomography PG Mikhael, J Wohlwend, A Yala, L Karstens, J Xiang, AK Takigami, ... Journal of Clinical Oncology 41 (12), 2191-2200, 2023 | 284 | 2023 |
| Boltz-2: Towards accurate and efficient binding affinity prediction S Passaro, G Corso, J Wohlwend, M Reveiz, S Thaler, VR Somnath, ... BioRxiv, 2025 | 224 | 2025 |
| Iterative refinement graph neural network for antibody sequence-structure co-design W Jin, J Wohlwend, R Barzilay, T Jaakkola arXiv preprint arXiv:2110.04624, 2021 | 202 | 2021 |
| Annotating metabolite mass spectra with domain-inspired chemical formula transformers S Goldman, J Wohlwend, M Stražar, G Haroush, RJ Xavier, CW Coley Nature Machine Intelligence 5 (9), 965-979, 2023 | 81 | 2023 |
| Autoregressive Knowledge Distillation through Imitation Learning A Lin, J Wohlwend, H Chen, T Lei arXiv preprint arXiv:2009.07253, 2020 | 51 | 2020 |
| ASAPP-ASR: Multistream CNN and Self-Attentive SRU for SOTA Speech Recognition J Pan, J Shapiro, J Wohlwend, KJ Han, T Lei, T Ma arXiv preprint arXiv:2005.10469, 2020 | 42 | 2020 |
| Artificial intelligence and machine learning in lung cancer screening SJ Adams, P Mikhael, J Wohlwend, R Barzilay, LV Sequist, FJ Fintelmann Thoracic Surgery Clinics 33 (4), 401-409, 2023 | 31 | 2023 |
| Intent discovery with a prototype classifier JEA Wohlwend, ER Elenberg, SA Altschul, M Griffiths US Patent 11,551,004, 2023 | 29 | 2023 |
| Feasibility of 3D reconstruction of neural morphology using expansion microscopy and barcode-guided agglomeration YG Yoon, P Dai, J Wohlwend, JB Chang, AH Marblestone, ES Boyden Frontiers in computational neuroscience 11, 299672, 2017 | 29 | 2017 |
| Processing communications using a prototype classifier JEA Wohlwend US Patent 10,747,957, 2020 | 27 | 2020 |
| Elliptic curve cryptography: Pre and post quantum J Wohlwend Technical report, 2016 | 25 | 2016 |
| Deep learning enhances the prediction of HLA class I-presented CD8+ T cell epitopes in foreign pathogens J Wohlwend, A Nathan, N Shalon, CR Crain, R Tano-Menka, B Goldberg, ... Nature machine intelligence 7 (2), 232-243, 2025 | 15 | 2025 |
| Metric learning for dynamic text classification J Wohlwend, ER Elenberg, S Altschul, S Henry, T Lei Proceedings of the 2nd Workshop on Deep Learning Approaches for Low-Resource …, 2019 | 15 | 2019 |
| Building a Production Model for Retrieval-Based Chatbots K Swanson, L Yu, C Fox, J Wohlwend, T Lei arXiv preprint arXiv:1906.03209, 2019 | 15 | 2019 |
| BoltzGen: Toward Universal Binder Design H Stark, F Faltings, MG Choi, Y Xie, E Hur, TJ O'Donnell, A Bushuiev, ... bioRxiv, 2025.11. 20.689494, 2025 | 7 | 2025 |
| MiniFold: Simple, Fast, and Accurate Protein Structure Prediction J Wohlwend, M Reveiz, M McPartlon, A Feldmann, W Jin, R Barzilay Transactions on Machine Learning Research, 2025 | 6 | 2025 |
| Influenza vaccine strain selection with an AI-based evolutionary and antigenicity model W Shi, J Wohlwend, M Wu, R Barzilay Nature Medicine, 1-9, 2025 | 5 | 2025 |
| Flambé: A Customizable Framework for Machine Learning Experiments J Wohlwend, N Matthews, I Itzcovich Proceedings of the 57th Annual Meeting of the Association for Computational …, 2019 | 2 | 2019 |
