| A mechanistic Individual-based Model of microbial communities PG Jayathilake, P Gupta, B Li, C Madsen, O Oyebamiji, ... PloS one 12 (8), e0181965, 2017 | 109 | 2017 |
| NUFEB: A massively parallel simulator for individual-based modelling of microbial communities B Li, D Taniguchi, JP Gedara, V Gogulancea, R Gonzalez-Cabaleiro, ... PLoS computational biology 15 (12), e1007125, 2019 | 80 | 2019 |
| Gaussian process emulation of an individual-based model simulation of microbial communities OK Oyebamiji, DJ Wilkinson, PG Jayathilake, TP Curtis, SP Rushton, B Li, ... Journal of computational science 22, 69-84, 2017 | 40 | 2017 |
| Individual based model links thermodynamics, chemical speciation and environmental conditions to microbial growth V Gogulancea, R González-Cabaleiro, B Li, D Taniguchi, PG Jayathilake, ... Frontiers in microbiology, 1871, 2019 | 28 | 2019 |
| Coupled CFD‐DEM modeling to predict how EPS affects bacterial biofilm deformation, recovery and detachment under flow conditions Y Xia, PG Jayathilake, B Li, P Zuliani, D Deehan, J Longyear, P Stoodley, ... Biotechnology and bioengineering 119 (9), 2551-2563, 2022 | 22 | 2022 |
| Modelling bacterial twitching in fluid flows: a CFD-DEM approach PG Jayathilake, B Li, P Zuliani, T Curtis, J Chen Scientific reports 9 (1), 1-10, 2019 | 18 | 2019 |
| SONCraft: A Tool for Construction, Simulation, and Analysis of Structured Occurrence Nets B Li, B Randell, A Bhattacharyya, T Alharbi, M Koutny 2018 18th International Conference on Application of Concurrency to System …, 2018 | 16* | 2018 |
| Bayesian emulation and calibration of an individual-based model of microbial communities OK Oyebamiji, DJ Wilkinson, B Li, PG Jayathilake, P Zuliani, TP Curtis Journal of computational science 30, 194-208, 2019 | 15 | 2019 |
| A Bayesian approach to modelling the impact of hydrodynamic shear stress on biofilm deformation OK Oyebamiji, DJ Wilkinson, PG Jayathilake, SP Rushton, B Bridgens, ... Plos one 13 (4), e0195484, 2018 | 14 | 2018 |
| Visualisation and analysis of complex behaviours using structured occurrence nets B Li Newcastle University, 2017 | 10 | 2017 |
| CFD–DEM modelling of biofilm streamer oscillations and their cohesive failure in fluid flow Y Xia, PG Jayathilake, B Li, P Zuliani, J Chen Biotechnology and Bioengineering 118 (2), 918-929, 2021 | 9 | 2021 |
| Time in structured occurrence nets A Bhattacharyya, B Li, B Randell International Workshop on Petri Nets and Software Engineering (PNSE’16), 35-55, 2016 | 9 | 2016 |
| Cooperation between autotrophic and heterotrophic denitrifiers under low C/N ratios revealed by individual-based modelling W Xing, D Gao, Y Wang, B Li, Z Zhang, P Zuliani, H Yao, TP Curtis Science of The Total Environment, 171091, 2024 | 6 | 2024 |
| Predicting partner fitness based on spatial structuring in a light-driven microbial community JK Sakkos, M Santos-Merino, EJ Kokarakis, B Li, M Fuentes-Cabrera, ... PLOS Computational Biology 19 (5), e1011045, 2023 | 6 | 2023 |
| Structured acyclic nets M Alahmadi, S Alharbi, T Alharbi, N Almutairi, T Alshammari, ... arXiv preprint arXiv:2401.07308, 2024 | 5 | 2024 |
| Unfolding CSPT-nets B Li, M Koutny International Workshop on Petri Nets and Software Engineering (PNSE’15), 207-226, 2015 | 4 | 2015 |
| Spatio-temporal Model Checking for 3D Individual-Based Biofilm Simulations B Li, JP Gedara, Y Xia, TP Curtis, P Zuliani International Symposium: From Data to Models and Back, 157-174, 2022 | 2 | 2022 |
| Investigating the growth of an engineered strain of Cyanobacteria with an Agent-Based Model and a Recurrent Neural Network J Sakkos, J Weaver, C Robertson, B Li, D Taniguchi, K Maheshwari, ... bioRxiv, 2021.10. 11.463942, 2021 | 2 | 2021 |
| Modelling and Optimisation of a DNA Stack Nano-Device Using Probabilistic Model Checking B Li, N Mackenzie, B Shirt-Ediss, N Krasnogor, P Zuliani 28th International Conference on DNA Computing and Molecular Programming …, 2022 | 1 | 2022 |
Paolo ZulianiAssociate Professor, Dipartimento di Informatica, Università di Roma "La Sapienza", Rome, ItalyVerified email at di.uniroma1.it
