| Phylogenomics and the rise of the angiosperms AR Zuntini, T Carruthers, O Maurin, PC Bailey, K Leempoel, GE Brewer, ... Nature 629 (8013), 843-850, 2024 | 349 | 2024 |
| Major clades of Australasian Rutoideae (Rutaceae) based on rbcL and atpB sequences MJ Bayly, GD Holmes, PI Forster, DJ Cantrill, PY Ladiges PLoS One 8 (8), e72493, 2013 | 61 | 2013 |
| Limitations to Reproductive Output and Genetic Rescue in Populations of the Rare Shrub Grevillea repens (Proteaceae) GD Holmes, EA James, AA Hoffmann Annals of Botany 102 (6), 1031-1041, 2008 | 52 | 2008 |
| Divergent levels of genetic variation and ploidy among populations of the rare shrub, Grevillea repens (Proteaceae) GD Holmes, EA James, AA Hoffmann Conservation Genetics 10 (4), 827-837, 2009 | 39 | 2009 |
| Specific mycorrhizal associations involving the same fungal taxa in common and threatened Caladenia (Orchidaceae): implications for conservation N Reiter, RD Phillips, ND Swarts, M Wright, G Holmes, FC Sussmilch, ... Annals of Botany 126 (5), 943-955, 2020 | 32 | 2020 |
| Testing efficacy of distance and tree-based methods for DNA barcoding of grasses (Poaceae tribe Poeae) in Australia JL Birch, NG Walsh, DJ Cantrill, GD Holmes, DJ Murphy PLoS One 12 (10), e0186259, 2017 | 31 | 2017 |
| Continental-scale distribution and diversity of Ceratobasidium orchid mycorrhizal fungi in Australia MW Freestone, ND Swarts, N Reiter, S Tomlinson, FC Sussmilch, ... Annals of Botany 128 (3), 329-343, 2021 | 30 | 2021 |
| A genome resource for Acacia, Australia’s largest plant genus TGB McLay, DJ Murphy, GD Holmes, S Mathews, GK Brown, DJ Cantrill, ... PloS one 17 (10), e0274267, 2022 | 25 | 2022 |
| Using transcriptomics to identify differential gene expression in response to salinity among Australian Phragmites australis clones. GD Holmes, NE Hall, AR Gendall, PI Boon, EA James Frontiers in Plant Science 7 (432), 2016 | 22 | 2016 |
| Transfer of the New Caledonian genus Boronella to Boronia (Rutaceae) based on analyses of cpDNA and nrDNA MJ Bayly, MF Duretto, GD Holmes, PI Forster, DJ Cantrill, PY Ladiges Australian Systematic Botany 28 (3), 111-123, 2015 | 18 | 2015 |
| Phylogeny of the holly grevilleas (Proteaceae) based on nuclear ribosomal and chloroplast DNA GD Holmes, TL Downing, EA James, MJ Blacket, AA Hoffmann, MJ Bayly Australian Systematic Botany 27 (1), 56-77, 2014 | 16 | 2014 |
| Phylogeny, biogeography and foliar manganese accumulation of Gossia (Myrtaceae) T McLay, GD Holmes, PI Forster, SE Hoebee, DR Fernando Australian Systematic Botany 31 (6), 374-388, 2018 | 13 | 2018 |
| Kgaria (Boletaceae, Boletoideae) gen. nov. in Australia: Neither a Tylopilus nor a Porphyrellus RE Halling, NA Fechner, G Holmes, N Davoodian Fungal Systematics and Evolution 12 (1), 47-62, 2023 | 11 | 2023 |
| The genealogy of geebungs: phylogenetic analysis of Persoonia (Proteaceae) and related genera in subfamily Persoonioideae GD Holmes, PH Weston, DJ Murphy, C Connelly, DJ Cantrill Australian systematic botany 31 (2), 166-189, 2018 | 10 | 2018 |
| Phylogeny, classification and biogeography of Halfordia (Rutaceae) in Australia and New Caledonia MJ Bayly, GD Holmes, PI Forster, J Munzinger, DJ Cantrill, PY Ladiges Plant Systematics and Evolution 302 (10), 1457-1470, 2016 | 9 | 2016 |
| An expanded phylogenetic analysis of Austrostipa (Poaceae: Stipeae) to test infrageneric relationships AE Syme, DJ Murphy, GD Holmes, S Gardner, R Fowler, DJ Cantrill Australian Systematic Botany 25 (1), 1-10, 2012 | 9 | 2012 |
| The Genomics for Australian Plants (GAP) framework initiative–developing genomic resources for understanding the evolution and conservation of the Australian flora L Simpson, DJ Cantrill, M Byrne, TR Allnutt, GJ King, M Lum, Z Al Bkhetan, ... Australian Systematic Botany 38 (3), NULL-NULL, 2025 | 7 | 2025 |
| Reproductive biology and population structure of the endangered shrub Grevillea bedggoodiana (Proteaceae) S Wawrzyczek, GD Holmes, SE Hoebee Conservation Genetics 24 (1), 7-23, 2023 | 7 | 2023 |
| Conservation biology of the rare shrub Grevillea repens F. Muell. Ex Meisn.(Proteaceae) GD Holmes University of Melbourne, CESAR, 2009 | 5 | 2009 |
| Taxonomic revision of fleshy species of Hydnellum, Neosarcodon, and Sarcodon (Thelephorales) from Australasia JK Douch, LJ Vaughan, JA Cooper, GD Holmes, R Robinson, F Stefani, ... Mycologia 116 (6), 965-992, 2024 | 4 | 2024 |