| Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005 | 2739 | 2005 |
| In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features Y Ding, Y Tang, CK Kwok, Y Zhang, PC Bevilacqua, SM Assmann Nature 505 (7485), 696-700, 2014 | 907 | 2014 |
| Bayesian inference of epistatic interactions in case-control studies Y Zhang, JS Liu Nature genetics 39 (9), 1167-1173, 2007 | 612 | 2007 |
| Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943-947, 2010 | 552 | 2010 |
| Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) W Miller, VM Hayes, A Ratan, DC Petersen, NE Wittekindt, J Miller, ... Proceedings of the National Academy of Sciences 108 (30), 12348-12353, 2011 | 285 | 2011 |
| The changing mouse embryo transcriptome at whole tissue and single-cell resolution P He, BA Williams, D Trout, GK Marinov, H Amrhein, L Berghella, ST Goh, ... Nature 583 (7818), 760-767, 2020 | 192 | 2020 |
| Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration W Wu, Y Cheng, CA Keller, J Ernst, SA Kumar, T Mishra, C Morrissey, ... Genome research 21 (10), 1659-1671, 2011 | 154 | 2011 |
| Alignment of optical maps A Valouev, L Li, YC Liu, DC Schwartz, Y Yang, Y Zhang, MS Waterman Journal of Computational Biology 13 (2), 442-462, 2006 | 111 | 2006 |
| Jointly characterizing epigenetic dynamics across multiple human cell types Y Zhang, L An, F Yue, RC Hardison Nucleic acids research 44 (14), 6721-6731, 2016 | 105 | 2016 |
| OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries L An, T Yang, J Yang, J Nuebler, G Xiang, RC Hardison, Q Li, Y Zhang Genome biology 20 (1), 282, 2019 | 99 | 2019 |
| PheWAS and beyond: the landscape of associations with medical diagnoses and clinical measures across 38,662 individuals from Geisinger A Verma, A Lucas, SS Verma, Y Zhang, N Josyula, A Khan, DN Hartzel, ... The American Journal of Human Genetics 102 (4), 592-608, 2018 | 86 | 2018 |
| Human-disease phenotype map derived from PheWAS across 38,682 individuals A Verma, L Bang, JE Miller, Y Zhang, MTM Lee, Y Zhang, ... The American Journal of Human Genetics 104 (1), 55-64, 2019 | 74 | 2019 |
| Calling SNPs without a reference sequence A Ratan, Y Zhang, VM Hayes, SC Schuster, W Miller BMC bioinformatics 11 (1), 130, 2010 | 62 | 2010 |
| A novel bayesian graphical model for genome‐wide multi‐SNP association mapping Y Zhang Genetic epidemiology 36 (1), 36-47, 2012 | 61 | 2012 |
| Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation Y Zhang, RC Hardison Nucleic acids research 45 (17), 9823-9836, 2017 | 56 | 2017 |
| An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis G Xiang, CA Keller, E Heuston, BM Giardine, L An, AQ Wixom, A Miller, ... Genome research 30 (3), 472-484, 2020 | 50 | 2020 |
| An Eulerian path approach to global multiple alignment for DNA sequences Y Zhang, MS Waterman Journal of Computational Biology 10 (6), 803-819, 2003 | 49 | 2003 |
| An Eulerian path approach to local multiple alignment for DNA sequences Y Zhang, MS Waterman Proceedings of the National Academy of Sciences 102 (5), 1285-1290, 2005 | 46 | 2005 |
| S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data G Xiang, CA Keller, B Giardine, L An, Q Li, Y Zhang, RC Hardison Nucleic acids research 48 (8), e43-e43, 2020 | 45 | 2020 |
| Optimization methods for selecting founder individuals for captive breeding or reintroduction of endangered species W Miller, SJ Wright, Y Zhang, SC Schuster, VM Hayes Biocomputing 2010, 43-53, 2010 | 42 | 2010 |
Ross C. HardisonProfessor Emeritus of Biochemistry and Molecular Biology, The Pennsylvania State UniversityVerified email at psu.edu
