| Emerging computational methods for the rational discovery of allosteric drugs JR Wagner*, CT Lee*, JD Durrant, RD Malmstrom, VA Feher, RE Amaro Chemical reviews 116 (11), 6370-6390, 2016 | 263 | 2016 |
| Simulation-Based Approaches for Determining Membrane Permeability of Small Compounds CT Lee, J Comer, C Herndon, N Leung, A Pavlova, RV Swift, C Tung, ... Journal of Chemical Information and Modeling 56 (4), 721-733, 2016 | 251 | 2016 |
| Application of molecular-dynamics based markov state models to functional proteins RD Malmstrom, CT Lee, AT Van Wart, RE Amaro Journal of chemical theory and computation 10 (7), 2648-2657, 2014 | 118 | 2014 |
| 3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries CT Lee, JG Laughlin, NA de La Beaumelle, RE Amaro, JA McCammon, ... PLOS Computational Biology 16 (4), e1007756, 2020 | 68 | 2020 |
| Known structure, unknown function: An inquiry‐based undergraduate biochemistry laboratory course C Gray, CW Price, CT Lee, AH Dewald, MA Cline, CE McAnany, ... Biochemistry and Molecular Biology Education 43 (4), 245-262, 2015 | 54 | 2015 |
| Cristae formation is a mechanical buckling event controlled by the inner mitochondrial membrane lipidome K Venkatraman, CT Lee, GC Garcia, A Mahapatra, D Milshteyn, G Perkins, ... The EMBO Journal 42 (24), e114054, 2023 | 47 | 2023 |
| Two relations to estimate membrane permeability using milestoning LW Votapka*, CT Lee*, RE Amaro The Journal of Physical Chemistry B 120 (33), 8606-8616, 2016 | 47 | 2016 |
| Structural basis for ligand modulation of the CCR2 conformational landscape BC Taylor, CT Lee, RE Amaro Proceedings of the National Academy of Sciences 116 (17), 8131-8136, 2019 | 44 | 2019 |
| Quantitative Ranking of Ligand Binding Kinetics with a Multiscale Milestoning Simulation Approach BR Jagger, CT Lee, RE Amaro The Journal of Physical Chemistry Letters, 2018 | 43 | 2018 |
| Morphological principles of neuronal mitochondria R Mendelsohn, GC Garcia, TM Bartol, CT Lee, P Khandelwal, E Liu, ... Journal of Comparative Neurology 530 (6), 886-902, 2022 | 40 | 2022 |
| The ins and outs of membrane bending by intrinsically disordered proteins F Yuan, CT Lee, A Sangani, JR Houser, L Wang, EM Lafer, P Rangamani, ... Science Advances 9 (27), eadg3485, 2023 | 39 | 2023 |
| An Open Source Mesh Generation Platform for Biophysical Modeling Using Realistic Cellular Geometries CT Lee, JG Laughlin, JB Moody, RE Amaro, JA McCammon, MJ Holst, ... Biophysical Journal, 2020 | 35 | 2020 |
| Exascale Computing: A New Dawn for Computational Biology CT Lee, RE Amaro Computing in Science & Engineering 20 (5), 18-25, 2018 | 35 | 2018 |
| Mem3DG: modeling membrane mechanochemical dynamics in 3D using discrete differential geometry C Zhu, CT Lee, P Rangamani Biophysical reports 2 (3), 100062, 2022 | 33 | 2022 |
| Dendritic spine morphology regulates calcium-dependent synaptic weight change MK Bell, MV Holst, CT Lee, P Rangamani Journal of General Physiology 154 (8), e202112980, 2022 | 26 | 2022 |
| Membrane mechanics dictate axonal pearls-on-a-string morphology and function JM Griswold, M Bonilla-Quintana, R Pepper, CT Lee, S Raychaudhuri, ... Nature neuroscience 28 (1), 49-61, 2025 | 25 | 2025 |
| Independent Markov decomposition: Toward modeling kinetics of biomolecular complexes T Hempel, MJ Del Razo, CT Lee, BC Taylor, RE Amaro, F Noé Proceedings of the National Academy of Sciences 118 (31), e2105230118, 2021 | 20 | 2021 |
| Setting the curve: the biophysical properties of lipids in mitochondrial form and function K Venkatraman, CT Lee, I Budin Journal of Lipid Research 65 (10), 2024 | 18 | 2024 |
| Value of models for membrane budding CT Lee, M Akamatsu, P Rangamani Current Opinion in Cell Biology 71, 38-45, 2021 | 12 | 2021 |
| Biophysical Modeling of Synaptic Plasticity CT Lee, M Bell, M Bonilla-Quintana, P Rangamani Annual Review of Biophysics 53, 2024 | 11 | 2024 |
Padmini RangamaniProfessor, Department of Pharmacology, UCSD School of MedicineVerified email at ucsd.edu
