| Organization of the Escherichia coli chromosome by a MukBEF axial core J Mäkelä, DJ Sherratt Molecular Cell 78 (2), 250-260. e5, 2020 | 114 | 2020 |
| Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes N Banaz*, J Mäkelä*, S Uphoff Journal of physics D: Applied physics 52 (6), 064002, 2019 | 80 | 2019 |
| Mytoe: automatic analysis of mitochondrial dynamics E Lihavainen, J Mäkelä, JN Spelbrink, AS Ribeiro Bioinformatics 28 (7), 1050-1051, 2012 | 73 | 2012 |
| Stochastic sequence-level model of coupled transcription and translation in prokaryotes J Mäkelä, J Lloyd-Price, O Yli-Harja, AS Ribeiro BMC bioinformatics 12 (1), 121, 2011 | 50 | 2011 |
| In vivo single-molecule kinetics of activation and subsequent activity of the arabinose promoter J Mäkelä, M Kandhavelu, SMD Oliveira, JG Chandraseelan, J Lloyd-Price, ... Nucleic Acids Research 41 (13), 6544-6552, 2013 | 43 | 2013 |
| SMC complexes organize the bacterial chromosome by lengthwise compaction J Mäkelä, D Sherratt Current genetics 66 (5), 895-899, 2020 | 41 | 2020 |
| Increased cytoplasm viscosity hampers aggregate polar segregation in Escherichia coli SMD Oliveira, R Neeli‐Venkata, NSM Goncalves, JA Santinha, L Martins, ... Molecular Microbiology 99 (4), 686-699, 2016 | 40 | 2016 |
| Self-organised segregation of bacterial chromosomal origins A Hofmann*, J Mäkelä*, DJ Sherratt, D Heermann, SM Murray Elife 8, e46564, 2019 | 39 | 2019 |
| Nonrandom segregation of sister chromosomes by Escherichia coli MukBEF J Mäkelä, S Uphoff, DJ Sherratt PNAS 118 (33), e2022078118, 2021 | 28 | 2021 |
| Dynamic architecture of the Escherichia coli structural maintenance of chromosomes (SMC) complex, MukBEF KV Rajasekar, R Baker, GLM Fisher, JR Bolla, J Mäkelä, M Tang, ... Nucleic acids research 47 (18), 9696-9707, 2019 | 27 | 2019 |
| Acyl carrier protein promotes MukBEF action in Escherichia coli chromosome organization-segregation JP Prince, JR Bolla, GLM Fisher, J Mäkelä, M Fournier, CV Robinson, ... Nature communications 12 (1), 6721, 2021 | 21 | 2021 |
| Rate-limiting steps in transcription dictate sensitivity to variability in cellular components J Mäkelä, V Kandavalli, AS Ribeiro Scientific Reports 7 (1), 10588, 2017 | 19 | 2017 |
| Competitive binding of MatP and topoisomerase IV to the MukB hinge domain GLM Fisher, JR Bolla, KV Rajasekar, J Mäkelä, R Baker, M Zhou, ... Elife 10, e70444, 2021 | 18 | 2021 |
| Genome concentration limits cell growth and modulates proteome composition in Escherichia coli J Mäkelä, A Papagiannakis, WH Lin, MC Lanz, S Glenn, M Swaffer, ... Elife 13, RP97465, 2024 | 15 | 2024 |
| Effects of codon sequence on the dynamics of genetic networks I Potapov, J Mäkelä, O Yli-Harja, AS Ribeiro Journal of Theoretical Biology 315, 17-25, 2012 | 13 | 2012 |
| Dynamics of bacterial operons during genome-wide stresses is influenced by premature terminations and internal promoters R Jagadeesan, S Dash, CSD Palma, ISC Baptista, V Chauhan, J Mäkelä, ... Science Advances 11 (20), eadl3570, 2025 | 7 | 2025 |
| ESTOOLS Data@ Hand: human stem cell gene expression resource L Kong, KL Aho, K Granberg, R Lund, L Järvenpää, J Seppälä, P Gokhale, ... Nature Methods 10 (9), 814-815, 2013 | 7 | 2013 |
| Dynamics of transcription of closely spaced promoters in Escherichia coli, one event at a time L Martins*, J Mäkelä*, A Häkkinen, M Kandhavelu, O Yli-Harja, ... Journal of theoretical biology 301, 83-94, 2012 | 7 | 2012 |
| Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli J Mäkelä, H Huttunen, M Kandhavelu, O Yli-Harja, AS Ribeiro Bioinformatics 27 (19), 2714-2720, 2011 | 7 | 2011 |
| Future Directions of the Prokaryotic Chromosome Field EA Abbondanzieri, AB Badrinarayanan, D Barillà, SD Bell, F Blombach, ... Molecular microbiology 123 (2), 89-100, 2025 | 2 | 2025 |
Andre S. RibeiroTampere UniversityVerified email at tuni.fi
