| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 18956 | 2012 |
| Architecture of the human regulatory network derived from ENCODE data MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ... Nature 489 (7414), 91-100, 2012 | 1776 | 2012 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) ENCODE Project Consortium PLoS Biol 9 (4), e1001046, 2011 | 1553 | 2011 |
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project MB Gerstein, ZJ Lu, EL Van Nostrand, C Cheng, BI Arshinoff, T Liu, ... Science 330 (6012), 1775, 2010 | 1208 | 2010 |
| A cis-regulatory map of the Drosophila genome N Nègre, CD Brown, L Ma, CA Bristow, SW Miller, U Wagner, ... Nature 471 (7339), 527-531, 2011 | 605 | 2011 |
| Life span extension by calorie restriction depends on Rim15 and transcription factors downstream of Ras/PKA, Tor, and Sch9 M Wei, P Fabrizio, J Hu, H Ge, C Cheng, L Li, VD Longo PLoS Genetics 4 (1), e13, 2008 | 604 | 2008 |
| Sir2 blocks extreme life-span extension P Fabrizio, C Gattazzo, L Battistella, M Wei, C Cheng, K McGrew, ... Cell 123 (4), 655-667, 2005 | 507 | 2005 |
| High-throughput proteomics: a methodological mini-review M Cui, C Cheng, L Zhang Laboratory investigation 102 (11), 1170-1181, 2022 | 369 | 2022 |
| CircNet: a database of circular RNAs derived from transcriptome sequencing data YC Liu, JR Li, CH Sun, E Andrews, RF Chao, FM Lin, SL Weng, SD Hsu, ... Nucleic Acids Res., pii: gkv940, 2015 | 354 | 2015 |
| Comparative analysis of the transcriptome across distant species M Gerstein, J Rozowsky, K Yan, D Wang, C Cheng, B Brown, C Davis, ... Nature 512, 445–448, 2014 | 348 | 2014 |
| Modeling gene expression using chromatin features in various cellular contexts X Dong, MC Greven, A Kundaje, S Djebali, JB Brown, C Cheng, ... Genome biology 13 (9), R53, 2012 | 342 | 2012 |
| A deep learning framework for modeling structural features of RNA-binding protein targets S Zhang, J Zhou, H H, H Gong, L Chen, C Cheng, J Zeng Nucleic Acids Res., gkv1025, 2015 | 328 | 2015 |
| Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors KY Yip, C Cheng, N Bhardwaj, JB Brown, J Leng, A Kundaje, J Rozowsky, ... Genome biology 13 (9), R48, 2012 | 317 | 2012 |
| VISTA is a checkpoint regulator for naïve T cell quiescence and peripheral tolerance MA ElTanbouly, Y Zhao, E Nowak, J Li, E Schaafsma, I Le Mercier, ... Science 367 (6475), eaay0524, 2020 | 303 | 2020 |
| Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. W Niu, ZJ Lu, M Zhong, M Sarov, JI Murray, CM Brdlik, J Janette, C Cheng, ... Genome Res. 21 (2), 245-254, 2011 | 285 | 2011 |
| Big data bioinformatics C Greene, J Tan, M Ung, J Moore, C Cheng J. Cell. Physiol., 2014 | 274 | 2014 |
| Immunoregulatory functions of VISTA EC Nowak, JL Lines, FS Varn, J Deng, A Sarde, R Mabaera, A Kuta, ... Immunological reviews 276 (1), 66-79, 2017 | 253 | 2017 |
| Comparative analysis of regulatory information and circuits across diverse species A Boyle, C Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ... Nature 512, 453–456, 2014 | 253 | 2014 |
| Reconstruction of enhancer–target networks in 935 samples of human primary cells, tissues and cell lines Q Cao, C Anyansi, X Hu, L Xu, L Xiong, W Tang, MTS Mok, C Cheng, ... Nature genetics 49 (10), 1428-1436, 2017 | 251 | 2017 |
| CD36-mediated metabolic rewiring of breast cancer cells promotes resistance to HER2-targeted therapies WW Feng, O Wilkins, S Bang, M Ung, J Li, J An, C Del Genio, K Canfield, ... Cell reports 29 (11), 3405-3420. e5, 2019 | 232 | 2019 |
Mark GersteinProfessor of Biomedical Informatics, Yale UniversityVerified email at yale.edu
