| ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees C Zhang, M Rabiee, E Sayyari, S Mirarab BMC bioinformatics 19 (Suppl 6), 153, 2018 | 2507 | 2018 |
| Fast coalescent-based computation of local branch support from quartet frequencies E Sayyari, S Mirarab Molecular biology and evolution 33 (7), 1654-1668, 2016 | 855 | 2016 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 384 | 2019 |
| ASTRAL-III: increased scalability and impacts of contracting low support branches C Zhang, E Sayyari, S Mirarab RECOMB international workshop on comparative genomics, 53-75, 2017 | 261 | 2017 |
| Multi-allele species reconstruction using ASTRAL M Rabiee, E Sayyari, S Mirarab Molecular phylogenetics and evolution 130, 286-296, 2019 | 183 | 2019 |
| Testing for polytomies in phylogenetic species trees using quartet frequencies E Sayyari, S Mirarab Genes 9 (3), 132, 2018 | 167 | 2018 |
| DiscoVista: interpretable visualizations of gene tree discordance E Sayyari, JB Whitfield, S Mirarab Molecular Phylogenetics and Evolution 122, 110-115, 2018 | 143 | 2018 |
| Fragmentary gene sequences negatively impact gene tree and species tree reconstruction E Sayyari, JB Whitfield, S Mirarab Molecular biology and evolution 34 (12), 3279-3291, 2017 | 104 | 2017 |
| Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction U Mai, E Sayyari, S Mirarab PloS one 12 (8), e0182238, 2017 | 102 | 2017 |
| EMPress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets K Cantrell, MW Fedarko, G Rahman, D McDonald, Y Yang, T Zaw, ... MSystems 6 (2), 10.1128/msystems. 01216-20, 2021 | 54 | 2021 |
| More is needed—Thousands of loci are required to elucidate the relationships of the ‘flowers of the sea’(Sabellida, Annelida) E Tilic, E Sayyari, J Stiller, S Mirarab, GW Rouse Molecular Phylogenetics and Evolution 151, 106892, 2020 | 47 | 2020 |
| Comparative genomics of C Zhang, E Sayyari, S Mirarab, J Meidanis, L Nakhleh Exiguobacterium profundum, 2017 | 36 | 2017 |
| Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction E Sayyari, S Mirarab BMC genomics 17 (Suppl 10), 783, 2016 | 34 | 2016 |
| TADA: phylogenetic augmentation of microbiome samples enhances phenotype classification E Sayyari, B Kawas, S Mirarab Bioinformatics 35 (14), i31-i40, 2019 | 18 | 2019 |
| Migraine analysis through EEG signals with classification approach E Sayyari, M Farzi, RR Estakhrooeieh, F Samiee, MB Shamsollahi 2012 11th International Conference on Information Science, Signal Processing …, 2012 | 15 | 2012 |
| Reference data based insights expand understanding of human metabolomes JM Gauglitz, W Bittremieux, CL Williams, KC Weldon, M Panitchpakdi, ... BioRxiv, 2020.07. 08.194159, 2020 | 13 | 2020 |
| Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair JH McDaniel, V Patel, ND Olson, HJ He, Z He, KD Cole, AA Gooden, ... Scientific data 12 (1), 1195, 2025 | 12 | 2025 |
| Hands that speak: An integrated approach to studying complex human communicative body movements N Weibel, SO Hwang, S Rick, E Sayyari, D Lenzen, J Hollan 2016 49th Hawaii international conference on system sciences (HICSS), 610-619, 2016 | 10 | 2016 |
| Tree-based associative data augmentation B Kawas, S Mirarab, E Sayyari US Patent 11,651,275, 2023 | 3 | 2023 |
| Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair JH McDaniel, V Patel, ND Olson, HJ He, Z He, KD Cole, AA Gooden, ... Scientific data 12 (1), 1385, 2025 | | 2025 |
