| Multiple wheat genomes reveal global variation in modern breeding S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa, J Brinton, ... Nature 588 (7837), 277-283, 2020 | 963 | 2020 |
| A cell atlas foundation model for scalable search of similar human cells G Heimberg, T Kuo, DJ DePianto, O Salem, T Heigl, N Diamant, G Scalia, ... Nature 638 (8052), 1085-1094, 2025 | 93 | 2025 |
| Trithorax group proteins act together with a Polycomb group protein to maintain chromatin integrity for epigenetic silencing during seed germination in Arabidopsis F Xu, T Kuo, Y Rosli, MS Liu, L Wu, LFO Chen, JC Fletcher, ZR Sung, ... Molecular Plant 11 (5), 659-677, 2018 | 61 | 2018 |
| Identification of cucurbitacins and assembly of a draft genome for Aquilaria agallocha CH Chen, TCY Kuo, MH Yang, TY Chien, MJ Chu, LC Huang, CY Chen, ... BMC genomics 15 (1), 578, 2014 | 60 | 2014 |
| Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek) MS Liu, TCY Kuo, CY Ko, DC Wu, KY Li, WJ Lin, CP Lin, YW Wang, ... BMC plant biology 16 (1), 46, 2016 | 51 | 2016 |
| The effect of red light and far-red light conditions on secondary metabolism in Agarwood TCY Kuo, CH Chen, SH Chen, IH Lu, MJ Chu, LC Huang, CY Lin, ... BMC Plant Biology 15 (1), 139, 2015 | 48 | 2015 |
| De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East … KK Shimizu, D Copetti, M Okada, T Wicker, T Tameshige, M Hatakeyama, ... Plant and Cell Physiology 62 (1), 8-27, 2021 | 44 | 2021 |
| Homeolog expression quantification methods for allopolyploids TCY Kuo, M Hatakeyama, T Tameshige, KK Shimizu, J Sese Briefings in Bioinformatics 21 (2), 395-407, 2020 | 43 | 2020 |
| Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophages G Heimberg, T Kuo, D DePianto, T Heigl, N Diamant, O Salem, G Scalia, ... BioRxiv, 2023.07. 18.549537, 2023 | 41 | 2023 |
| Protein structure from contact maps: A case-based reasoning approach J Glasgow, T Kuo, J Davies Information systems frontiers 8 (1), 29-36, 2006 | 41 | 2006 |
| Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes Y Satoh, J Asakawa, M Nishimura, T Kuo, N Shinkai, HM Cullings, ... Scientific reports 10 (1), 37, 2020 | 35 | 2020 |
| EAGLE: explicit alternative genome likelihood evaluator T Kuo, MC Frith, J Sese, P Horton BMC medical genomics 11 (Suppl 2), 28, 2018 | 31 | 2018 |
| Gefitinib‐induced epidermal growth factor receptor‐independent keratinocyte apoptosis is mediated by the JNK activation pathway PH Lu, TC Kuo, KC Chang, CH Chang, CY Chu British Journal of Dermatology 164 (1), 38-46, 2011 | 26 | 2011 |
| Identification of binding targets of a pyrrole-imidazole polyamide KR12 in the LS180 colorectal cancer genome J Lin, K Hiraoka, T Watanabe, T Kuo, Y Shinozaki, A Takatori, ... PLoS One 11 (10), e0165581, 2016 | 16 | 2016 |
| Visio‐spatial case‐based reasoning: A case study in prediction of protein structure J Davies, J Glasgow, T Kuo Computational Intelligence 22 (3‐4), 194-207, 2006 | 16 | 2006 |
| Study of a new environmental chamber design BJ Huang, YC Liao, TC Kuo Applied thermal engineering 27 (11-12), 1967-1977, 2007 | 15 | 2007 |
| Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes M Iwase, S Sakai, S Seno, YS Yeh, T Kuo, H Takahashi, W Nomura, ... Bioscience, biotechnology, and biochemistry 84 (2), 305-313, 2020 | 13 | 2020 |
| Learning multi-cellular representations of single-cell transcriptomics data enables characterization of patient-level disease states T Liu, E De Brouwer, T Kuo, N Diamant, A Missarova, H Wang, M Hao, ... International Conference on Research in Computational Molecular Biology, 303-306, 2025 | 7 | 2025 |
| ARPEGGIO: automated reproducible polyploid EpiGenetic GuIdance workflOw S Milosavljevic, T Kuo, S Decarli, L Mohn, J Sese, KK Shimizu, ... BMC genomics 22 (1), 547, 2021 | 4 | 2021 |
| Involvement of Rev1 in alkylating agent‐induced loss of heterozygosity in Oryzias latipes Y Fujikawa, T Ishikawa‐Fujiwara, T Kuo, N Shinkai, T Shoji, T Kawasaki, ... Genes to Cells 25 (2), 124-138, 2020 | 3 | 2020 |
