| Squidpy: a scalable framework for spatial omics analysis G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ... Nature methods 19 (2), 171-178, 2022 | 959 | 2022 |
| Distinct molecular profiles of skull bone marrow in health and neurological disorders ZI Kolabas, LB Kuemmerle, R Perneczky, B Förstera, S Ulukaya, M Ali, ... Cell 186 (17), 3706-3725. e29, 2023 | 159 | 2023 |
| Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows S Marco Salas, LB Kuemmerle, C Mattsson-Langseth, S Tismeyer, ... Nature Methods, 1-11, 2025 | 115 | 2025 |
| Clinical validation of saliency maps for understanding deep neural networks in ophthalmology MS Ayhan, LB Kuemmerle, L Kuehlewein, W Inhoffen, G Aliyeva, ... Medical Image Analysis 77, 102364, 2022 | 64 | 2022 |
| Probe set selection for targeted spatial transcriptomics LB Kuemmerle, MD Luecken, AB Firsova, L Barros de Andrade e Sousa, ... Nature methods 21 (12), 2260-2270, 2024 | 35 | 2024 |
| The discovAIR project: a roadmap towards the Human Lung Cell Atlas MD Luecken, LE Zaragosi, E Madissoon, L Sikkema, AB Firsova, ... European Respiratory Journal 60 (2), 2022 | 26 | 2022 |
| Potential of methods of artificial intelligence for quality assurance P Berens, SM Waldstein, MS Ayhan, L Kuemmerle, H Agostini, A Stahl, ... Der Ophthalmologe: Zeitschrift der Deutschen Ophthalmologischen Gesellschaft …, 2020 | 7* | 2020 |
| 2D, or not 2D? Investigating vertical signal integrity of tissue slices S Tiesmeyer, N Müller-Bötticher, A Malt, L Ma, S Marco-Salas, P Kiessling, ... bioRxiv, 2025.01. 13.632601, 2025 | 6 | 2025 |
| Spatial single-cell atlas reveals regional variations in healthy and diseased human lung AB Firsova, S Marco Salas, LB Kuemmerle, XM Abalo, A Sountoulidis, ... Nature Communications 16 (1), 9745, 2025 | 1 | 2025 |
| Brain Region-Specific Oligodendrocyte States Highlight Mitochondrial Gene Upregulation and Loss of Canonical Identity Signatures in Alzheimer’s Disease F Drummer, N Dorosti, C Hurler, E Beltrán, LB Kümmerle, F Theis, S Jäkel bioRxiv, 2026.01. 14.699226, 2026 | | 2026 |
| DISCO-seq: 3D single-cell transcriptomics of intact biological systems HS Bhatia, LHA Simons, LB Kuemmerle, C McCabe, S Jansen, Z He, ... bioRxiv, 2025.12. 10.693352, 2025 | | 2025 |
