| Epistasis as the primary factor in molecular evolution MS Breen, C Kemena, PK Vlasov, C Notredame, FA Kondrashov Nature 490 (7421), 535-538, 2012 | 473 | 2012 |
| Upcoming challenges for multiple sequence alignment methods in the high-throughput era C Kemena, C Notredame Bioinformatics 25 (19), 2455-2465, 2009 | 329 | 2009 |
| Multiple sequence alignment modeling: methods and applications M Chatzou, C Magis, JM Chang, C Kemena, G Bussotti, I Erb, ... Briefings in bioinformatics 17 (6), 1009-1023, 2016 | 323 | 2016 |
| Hemimetabolous genomes reveal molecular basis of termite eusociality MC Harrison, E Jongepier, HM Robertson, N Arning, T Bitard-Feildel, ... Nature ecology & evolution 2 (3), 557-566, 2018 | 294 | 2018 |
| Transposable element islands facilitate adaptation to novel environments in an invasive species L Schrader, JW Kim, D Ence, A Zimin, A Klein, K Wyschetzki, ... Nature communications 5 (1), 5495, 2014 | 250 | 2014 |
| Alignathon: a competitive assessment of whole-genome alignment methods D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ... Genome research 24 (12), 2077-2089, 2014 | 137 | 2014 |
| Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ... Nature protocols 6 (11), 1669-1682, 2011 | 125 | 2011 |
| The modular nature of protein evolution: domain rearrangement rates across eukaryotic life E Dohmen, S Klasberg, E Bornberg-Bauer, S Perrey, C Kemena BMC Evolutionary Biology 20 (1), 30, 2020 | 66 | 2020 |
| How do genomes create novel phenotypes? Insights from the loss of the worker caste in ant social parasites CR Smith, S Helms Cahan, C Kemena, SG Brady, W Yang, ... Molecular biology and evolution 32 (11), 2919-2931, 2015 | 65 | 2015 |
| DOGMA: domain-based transcriptome and proteome quality assessment E Dohmen, LPM Kremer, E Bornberg-Bauer, C Kemena Bioinformatics 32 (17), 2577-2581, 2016 | 50 | 2016 |
| STRIKE: evaluation of protein MSAs using a single 3D structure C Kemena, JF Taly, J Kleinjung, C Notredame Bioinformatics 27 (24), 3385-3391, 2011 | 40 | 2011 |
| Remodeling of the juvenile hormone pathway through caste‐biased gene expression and positive selection along a gradient of termite eusociality E Jongepier, C Kemena, A Lopez‐Ezquerra, X Belles, E Bornberg‐Bauer, ... Journal of Experimental Zoology Part B: Molecular and Developmental …, 2018 | 26 | 2018 |
| Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package C Kemena, G Bussotti, E Capriotti, MA Marti-Renom, C Notredame Bioinformatics 29 (9), 1112-1119, 2013 | 25 | 2013 |
| DOGMA: a web server for proteome and transcriptome quality assessment C Kemena, E Dohmen, E Bornberg-Bauer Nucleic Acids Research 47 (W1), W507-W510, 2019 | 22 | 2019 |
| Domain evolution of vertebrate blood coagulation cascade proteins A Coban, E Bornberg-Bauer, C Kemena Journal of Molecular Evolution 90 (6), 418-428, 2022 | 16 | 2022 |
| Domain similarity based orthology detection T Bitard-Feildel, C Kemena, JM Greenwood, E Bornberg-Bauer BMC bioinformatics 16 (1), 154, 2015 | 16 | 2015 |
| Enhancing the scalability of consistency-based progressive multiple sequences alignment applications M Orobitg, F Cores, F Guirado, C Kemena, C Notredame, A Ripoll 2012 IEEE 26th International Parallel and Distributed Processing Symposium …, 2012 | 12 | 2012 |
| SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments P Di Tommaso, G Bussotti, C Kemena, E Capriotti, M Chatzou, P Prieto, ... Nucleic acids research 42 (W1), W356-W360, 2014 | 7 | 2014 |
| MDAT-Aligning multiple domain arrangements C Kemena, T Bitard-Feildel, E Bornberg-Bauer BMC bioinformatics 16 (1), 19, 2015 | 6 | 2015 |
| Tracing the paths of modular evolution by quantifying rearrangement events of protein domains A Coban, E Bornberg-Bauer, C Kemena BMC Ecology and Evolution 25 (1), 6, 2025 | 4 | 2025 |
Cedric NotredameCentre for Genomic Regulation, SpainVerified email at crg.eu
