| FlexiDot: highly customizable, ambiguity-aware dotplots for visual sequence analyses KM Seibt, T Schmidt, T Heitkam Bioinformatics, 2018 | 81 | 2018 |
| Adding color to a century‐old enigma: multi‐color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus … T Schmidt, T Heitkam, S Liedtke, V Schubert, G Menzel New Phytologist, 2019 | 73 | 2019 |
| ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data L Mann, KM Seibt, B Weber, T Heitkam BMC Bioinformatics 23 (1), 1-15, 2022 | 57 | 2022 |
| Satellite DNA landscapes after allotetraploidisation of quinoa (Chenopodium quinoa) reveal unique A and B subgenomes T Heitkam, B Weber, I Walter, S Liedtke, C Ost, T Schmidt The Plant Journal, 2020 | 51 | 2020 |
| Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades T Heitkam, D Holtgräwe, JC Dohm, AE Minoche, H Himmelbauer, ... The Plant Journal 79 (3), 385-397, 2014 | 45 | 2014 |
| The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age B Weber, T Wenke, U Frömmel, T Schmidt, T Heitkam Chromosome Research 18 (2), 247-263, 2010 | 45 | 2010 |
| Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration B Weber, T Heitkam, D Holtgräwe, B Weisshaar, AE Minoche, JC Dohm, ... Mobile DNA 4 (1), 8, 2013 | 43 | 2013 |
| BNR – a LINE family from Beta vulgaris– contains a RRM domain in open reading frame 1 and defines a L1 sub‐clade present in diverse plant genomes T Heitkam, T Schmidt The Plant Journal 59 (6), 872-882, 2009 | 40 | 2009 |
| Next-generation sequencing reveals differentially amplified tandem repeats as a major genome component of Northern Europe's oldest Camellia japonica T Heitkam, S Petrasch, F Zakrzewski, A Kögler, T Wenke, S Wanke, ... Chromosome Research 23 (4), 791-806, 2015 | 38 | 2015 |
| Broken, silent, and in hiding: tamed endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris) N Schmidt, KM Seibt, B Weber, T Schwarzacher, T Schmidt, T Heitkam Annals of Botany, 2021 | 33 | 2021 |
| Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome C Wollrab, T Heitkam, D Holtgräwe, B Weisshaar, AE Minoche, JC Dohm, ... The Plant Journal 72 (4), 636-651, 2012 | 33 | 2012 |
| A comparative analysis of two conserved motifs in bacterial poly (A) polymerase and CCA-adding enzyme A Just, F Butter, M Trenkmann, T Heitkam, M Mörl, H Betat Nucleic Acids Research 36 (16), 5212-5220, 2008 | 32 | 2008 |
| Ancient artworks and crocus genetics both support saffron’s origin in early Greece SS Kazemi Shahandashti, L Mann, A El-nagish, D Harpke, Z Nemati, ... Frontiers in Plant Science, 374, 2022 | 31 | 2022 |
| TE-Tracker: systematic identification of transposition events through whole-genome resequencing A Gilly, M Etcheverry, MA Madoui, J Guy, L Quadrana, A Alberti, A Martin, ... BMC Bioinformatics 15 (1), 377, 2014 | 30 | 2014 |
| TE Hub: a community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation The TE Hub Consortium, TA Elliott, T Heitkam, R Hubley, H Quesneville, ... Mobile DNA 12 (1), 1-5, 2021 | 28* | 2021 |
| Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA L Schulte, S Meucci, KR Stoof-Leichsenring, T Heitkam, N Schmidt, ... Communications Biology 5 (1), 570, 2022 | 26 | 2022 |
| Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives K Sielemann, B Pucker, N Schmidt, P Viehöver, B Weisshaar, T Heitkam, ... BMC genomics 23 (1), 113, 2022 | 24 | 2022 |
| The dynamic interplay between ribosomal DNA and transposable elements: a perspective from genomics and cytogenetics S Garcia, A Kovarik, S Maiwald, L Mann, N Schmidt, JP Pascual-Díaz, ... Molecular Biology and Evolution 41 (3), msae025, 2024 | 21 | 2024 |
| The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: recombination and re-shuffling lead to a high structural variability S Maiwald, B Weber, KM Seibt, T Schmidt, T Heitkam Annals of Botany 127 (1), 91-109, 2021 | 20 | 2021 |
| Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets N Schmidt, K Sielemann, S Breitenbach, J Fuchs, B Pucker, B Weisshaar, ... The Plant Journal 118 (1), 171-190, 2024 | 19 | 2024 |
Thomas SchmidtProfessor Verified email at tu-dresden.de
